Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01002 ATGGCTGCAACGATGGCTTTTATGTCCTCCATTATTCTCTTTCATCTCTTAACAATCTCATCAGCCATGGACATGTCCATCACCACCAACCAGCAGCCACAACAACCGAACACGATGAGAACCGACGATGAAGTCATGATCATGTACGAGGAATGGTTGGTGAAGCACCAAAAGGTGTACAATGGGTTGGGAGAGAAAGACAAGAGGTTCCAAGTTTTTAAGGATAACTTGGGTTTCATTGATGAACACAACACACACAAAAACACCACATACAAACTTGGGTTGAATAGGTTCGCTGATTTGACGAATGAAGAGTACAGAGCAATGTATTTGGGGACAAAGAGTGATCCCAACCGCAGGATCATCAAGGCCAAGATCAGCGCCGGCAACCGTTACGCTTATAGCGCACGTGACCGGTTGCCGGTGCACGTGGATTGGAGGTCCAAAGGTGCACTTGCACCCGTCAAGGATCAGGGAAGCTGTGGAAGTTGTTGGGCATTCTCAACAATAGCTGCAGTGGAATCCATAAATAAGATAGTAACAGGGAAGCTTGTGAGTTTGTCAGAACAAGAACTTGTTGACTGTGACAAAGCATTCAACGAAGGCTGCAATGGTGGTCTCATGGACTATGCCTTCCAATTCATCATTGCAAACGGTGGCATAGACACCGAGCAACACTATCCATACAAGGGCATTGATGGCACATGTGATCCAACCAGAAAGAATGCTAAGGTAGTGAGCATCGATGGGTACGAGGATGTTCCGGTGAATGATGAGAAGGCTTTGAAGAAAGCTGTTGCTCATCAGCCTGTCAGCGTTGCTATTGAAGCCTCTGGCAGGGCCTTGCAACTCTACGACTCAGGTGTGTTTACGGGTAGATGTGGAACAAGTTTAGATCATGGTGTGGTTGTAGTTGGATATGGAACCGAAAATGGTGTAGACTATTGGCTTGTGAGGAATTCATGGGGCAAGAATTGGGGCGAGGATGGCTACTTCAAGTTGCAGCGTAACGTGAGAGGCACCAATACTGGCAAATGTGGAATCGCCATGGAAGCCTCGTACCCGGTGAAGAATGGCGCAAACGCCGCAATCCAGAACCCGGCTTCCCAGAGAACTGGAGGGAGTGTTAGCAGCGCTTGA 1140 0.4789 MAATMAFMSSIILFHLLTISSAMDMSITTNQQPQQPNTMRTDDEVMIMYEEWLVKHQKVYNGLGEKDKRFQVFKDNLGFIDEHNTHKNTTYKLGLNRFADLTNEEYRAMYLGTKSDPNRRIIKAKISAGNRYAYSARDRLPVHVDWRSKGALAPVKDQGSCGSCWAFSTIAAVESINKIVTGKLVSLSEQELVDCDKAFNEGCNGGLMDYAFQFIIANGGIDTEQHYPYKGIDGTCDPTRKNAKVVSIDGYEDVPVNDEKALKKAVAHQPVSVAIEASGRALQLYDSGVFTGRCGTSLDHGVVVVGYGTENGVDYWLVRNSWGKNWGEDGYFKLQRNVRGTNTGKCGIAMEASYPVKNGANAAIQNPASQRTGGSVSSA 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01002 379 CDD Peptidase_C1A 141 355 IPR039417 -
Aip01g01002 379 Pfam Papain family cysteine protease 140 356 IPR000668 GO:0006508|GO:0008234
Aip01g01002 379 SMART Inhibitor_I29_2 49 106 IPR013201 -
Aip01g01002 379 Pfam Cathepsin propeptide inhibitor domain (I29) 49 106 IPR013201 -
Aip01g01002 379 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 158 169 IPR000169 -
Aip01g01002 379 PRINTS Papain cysteine protease (C1) family signature 158 173 IPR000668 GO:0006508|GO:0008234
Aip01g01002 379 PRINTS Papain cysteine protease (C1) family signature 300 310 IPR000668 GO:0006508|GO:0008234
Aip01g01002 379 PRINTS Papain cysteine protease (C1) family signature 315 321 IPR000668 GO:0006508|GO:0008234
Aip01g01002 379 SMART pept_c1 140 356 IPR000668 GO:0006508|GO:0008234
Aip01g01002 379 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 298 308 IPR025660 -
Aip01g01002 379 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 30 364 - -
Aip01g01002 379 SUPERFAMILY Cysteine proteinases 41 356 IPR038765 -
Aip01g01002 379 PANTHER CYSTEINE PROTEASE 30 364 - -
Aip01g01002 379 Gene3D Cysteine proteinases 18 358 - -
Aip01g01002 379 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 315 334 IPR025661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01002 Aip-Chr1 20382492 20386423 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03743 09 144254784 144257191 Aip01g01002 01 20382492 20386423 ECH
Aip06g03751 06 135157387 135161869 Aip01g01002 01 20382492 20386423 ECH
Aip01g01002 01 20382492 20386423 Aip01g01002 01 20382492 20386423 ECH