Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g2060 ATGTGTTCACAGAGTGTAGTTCCTTCATCACTTTTGCTCATGTTATTGGTTTCTTCTTCTGGCTTGTGTTTTGGCTCTTACATTGGCCCTAGGAGGTTGATGCAGACAAAACATGATGAAAATATGGATATCATGTTAAGGGTTCATCATCAATCAACACCATCTTCAATAATGTCTCAAAAAACGTTTAGTGTTTCACATTATGGAGCAAAATCTGGTGATGGAAGAGTTGATAATGAGGCATTTGAGAAGGCATGGAATTTAGCATGTTCAGAAGGGGGTGCTCTTGTGGTCCCTAAAGAGAAGGTTTATCACCTTAAGCCAATAAAATTTTCAGGCCCATGCCAAGCCAGTACCACTTTTATGTTATATGGAACAATCAAAGCATGGCCTAAAATTTCAGCCTATGAAGAAGATAGACAGCACTGGATTATGTTTGATAATGTAACGAATTTTGGTGTTGATGGTGGCGGCACTTTCAACGGCAATGGAAAAATATGGTGGGAAAACTCTTGCAAAACTAACGAAAGCCTTCCATGTAAGGATGCACCAACTGCTGTGACTTTCAATGAATGCAACAATTTGAGAGTGGAAAACGTTGGATTCCGAAATGCACAACAAATGCATGTTAGATTTCAGAAATGCAACAACGTTACAGCTTCAAATCTGGTGGTTCAAGCTCCTGGGGATAGCCCTAACACTGATGGACTTCACGTCACTCAAACCAAAAATATTTTCATAAGAAACTCTGTCATTCGTACAGGTGATGACTGCATTTCAATAGTGAGTGGTTCCCAAAATGTTCGTGCTACGGATATAGTTTGTGGACCAGGACATGGAATCAGCATTGGAAGCTTAGGAGCTGGTAATTCAGAAGCACAAGTCTCCAATGTGGTAATCGACGGAGCCATTTTCACAGGAACCTCTAATGGTGTTAGAATTAAGACTTGGCAGGGAGGTTCTGGATATGCAAAAGACATCAAATTTATTAATATAGAAATGCGAAACGTGACCAATCCCATAATCATAGATCAAAACTACTGTGATCAGAAAGAACCATGCCAAGAGCAGGAATCAGCAGTGAAATTGAGCAATGTGGTGTACCAGAACATCATAGGAACAAGTGCAACACAAGTTGCAATCAAATTCAACTGCAGCAAAACCGTCCCCTGCAGATCAATCTATTTGCAAGACGTGATTCTAAAGCCGGAACGCCATGGCAGCGACACGGTTGCGACATGTGAGAACGTTAGATATGCCAACAGAGGACAGCTTTTTCCTCAGTGCTCTACTGCTTGA 1299 0.4103 MCSQSVVPSSLLLMLLVSSSGLCFGSYIGPRRLMQTKHDENMDIMLRVHHQSTPSSIMSQKTFSVSHYGAKSGDGRVDNEAFEKAWNLACSEGGALVVPKEKVYHLKPIKFSGPCQASTTFMLYGTIKAWPKISAYEEDRQHWIMFDNVTNFGVDGGGTFNGNGKIWWENSCKTNESLPCKDAPTAVTFNECNNLRVENVGFRNAQQMHVRFQKCNNVTASNLVVQAPGDSPNTDGLHVTQTKNIFIRNSVIRTGDDCISIVSGSQNVRATDIVCGPGHGISIGSLGAGNSEAQVSNVVIDGAIFTGTSNGVRIKTWQGGSGYAKDIKFINIEMRNVTNPIIIDQNYCDQKEPCQEQESAVKLSNVVYQNIIGTSATQVAIKFNCSKTVPCRSIYLQDVILKPERHGSDTVATCENVRYANRGQLFPQCSTA* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g2060 432 PANTHER POLYGALACTURONASE 21 430 - -
Ahy8g2060 432 Gene3D - 47 429 IPR012334 -
Ahy8g2060 432 SMART pbh1 295 316 IPR006626 -
Ahy8g2060 432 SMART pbh1 265 285 IPR006626 -
Ahy8g2060 432 SMART pbh1 324 345 IPR006626 -
Ahy8g2060 432 SMART pbh1 215 241 IPR006626 -
Ahy8g2060 432 SMART pbh1 242 263 IPR006626 -
Ahy8g2060 432 Pfam Glycosyl hydrolases family 28 95 418 IPR000743 GO:0004650|GO:0005975
Ahy8g2060 432 PANTHER - 21 430 - -
Ahy8g2060 432 SUPERFAMILY Pectin lyase-like 49 430 IPR011050 -
Ahy8g2060 432 ProSitePatterns Polygalacturonase active site. 272 285 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g2060 Ahy-Chr8 41194701 41199943 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2140 18 115258603 115264506 Ahy8g2060 8 41194701 41199943 hybridization
Ahy13g1133 13 12740889 12744533 Ahy8g2060 8 41194701 41199943 PCT
Ahy20g3159 20 142251501 142253450 Ahy8g2060 8 41194701 41199943 PCT
Ahy10g2597 10 115470422 115477210 Ahy8g2060 8 41194701 41199943 PCT