LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy8g0316	ATGGCTCTTCTGCTAGACAACTGCGAGAGCATTCTACTGTCGCTAGAGTCAAACAAGTCGGTGCCGGCGCCGTTTCTGACAAAGACGTACCAGCTGGTGGACGATCCAGCCACCGATCACATAGTGTCATGGGGAGAAGACCAAAGCACCTTCGTCGTTTGGCGTCCTCCTGAGTTCGCTAGAGATCTTCTTCCTAATTACTTCAAACACAATAACTTCTCAAGTTTCGTTCGCCAGCTCAATACTTATGGTTTCAGAAAGATTGTTCCGGATAGGTGGGAGTTTGCTAATGAATTCTTCAAGAAGGGAGAGAAGCACTTGCTGTGTGAGATCCATAGAAGAAAAACCGCACACCACCCTCAACAGATAACCGCCATCAACCACCACCACTCTCCGATTCCTTCTTTCTTTCCATTCTCAAGCAGGCTCAGCATCTCGCCGCCAAACGACTCCGATGACCAAGCCAATTGGTGTGACTCTCCGCCGCCCACCGCCACACCCTGCTACAACACCTCATCCGTCACGGCGCTGTCGGAGGACAATGAGAGGCTGAGGCGGAGCAACACCATGCTCATGTCAGAGCTTGCACACATGAAGAAGCTCTACAATGACATAATCTACTTCGTTCAGAACCATGTGAAGCCAGTTCCTCCAAGCAACACTTGTTCTTCTTCTTTGCTTCTTTGCAATAACACGCCATCATCACATTCATATGCTTCTTCCGGTGCCGCTAATGGTAACGTTTCAATGCTGCAAAGGCCGATGAACCATCTTCTCGGGTATTATTCTCAAACTCAAAACTGTCCAAGCAACACGGCAAGGAGCTCCGTCACGATTGTGGAAGCGCCACCACCCTGTAAGACCAAGCTTTTTGGAGTGCCGCTTCAGTCCAAGAAAAGGGTGCACCCTGAGTATGGGTCTAACAACCTCGCTAATTCAGAGACTAACAAGGCGCGTTTGATTTTGGAGAAGGATGACCTTGGCTTGAATCTCATGCCTCCTTCTACTACTTGTTAA	1017	0.4907	MALLLDNCESILLSLESNKSVPAPFLTKTYQLVDDPATDHIVSWGEDQSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAHHPQQITAINHHHSPIPSFFPFSSRLSISPPNDSDDQANWCDSPPPTATPCYNTSSVTALSEDNERLRRSNTMLMSELAHMKKLYNDIIYFVQNHVKPVPPSNTCSSSLLLCNNTPSSHSYASSGAANGNVSMLQRPMNHLLGYYSQTQNCPSNTARSSVTIVEAPPPCKTKLFGVPLQSKKRVHPEYGSNNLANSETNKARLILEKDDLGLNLMPPSTTC*	339

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy8g0316	338	Gene3D	-	17	116	IPR036388	-
	Ahy8g0316	338	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	12	336	IPR027725	-
	Ahy8g0316	338	PANTHER	BNAC06G00310D PROTEIN	12	336	-	-
	Ahy8g0316	338	Pfam	HSF-type DNA-binding	25	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy8g0316	338	SUPERFAMILY	"Winged helix" DNA-binding domain	22	114	IPR036390	-
	Ahy8g0316	338	SMART	hsfneu3	21	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy8g0316	338	ProSitePatterns	HSF-type DNA-binding domain signature.	64	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy8g0316	338	PRINTS	Heat shock factor (HSF) domain signature	76	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy8g0316	338	PRINTS	Heat shock factor (HSF) domain signature	25	48	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy8g0316	338	PRINTS	Heat shock factor (HSF) domain signature	63	75	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy8g0316	Ahy-Chr8	6531647	6533456	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy8g0316	1	336	HSF	AT1G46264	54.960	9.20e-117	340

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Ahy8g0316		HSF_DNA-bind	2.50E-32	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy17g2524	17	120033659	120035500	Ahy8g0316	8	6531647	6533456	hybridization
	Ahy16g3525	16	152791960	152793389	Ahy8g0316	8	6531647	6533456	PCT
	Ahy6g2772	6	113487955	113489384	Ahy8g0316	8	6531647	6533456	PCT
	Ahy8g0316	8	6531647	6533456	Ahy16g3525	16	152791960	152793389	PCT
	Ahy8g0316	8	6531647	6533456	Ahy6g2772	6	113487955	113489384	PCT