Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2853 ATGGGTTGGCTTAGCAAATTTTTCAAAGGCTCCGACCAAAAGATTTCGGAAGGGCATTACCATTCGTATTATAACGGGGATGCGGATTCTTACTTGCCATCGACGTCTGGTGTAACAAACGATGTTTGGCCTGAGAATGAGAACGAAGATATAGATCGTGCCATTGCATTATCTCTGGCAGAGCAAAATCATAGAGGAAACCATGTAAATGACTACAGATCTCAATTAGAAGAAGATGAACAACTTGCCAGAGCTATAGAAGAAAGCCTAAATCTAGAGTCTCCTCCGAAATATGGAAACGAGAACATGTATCAACCCCATCCGGCGGTTCCAATTCCAGTACCAGTGTATTTCCCAATGGGATCAAGTTTTTTGCATAATAGGATTTGTGCTGGCTGCCATACTGAGATTGGTTATGGACGATATCTAAATTGTTTGAATGCTTTCTGGCATCCTGAATGCTTCCGCTGTCATGCTTGCAACCTACCGATCTCTGATTATGAGTTCTCCACGTCGGGAAATTACCCTTACCATAAATCATGCTATAAGGAAAGCTACCATCCAAAATGTGACGTCTGCAAGCATTTCATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGGTCCAAAAATATTGCCCTTCTCATGAACACGATAACACTCCAAGATGTTGCAGCTGTGAGCGAATGGAGCCACGAGAGACTGGATATATCGGTCTTAATGATGGCCGGAAGCTTTGCTTAGAGTGCCTTGACTCTGCAATCATGGATACAAGCGAATGCCAACCGCTTTATGTTGATATACAAAGATTTTATGAAAGCTTAGACATGAAATTGGAGCAGCAAATTCCACTTCTCTTGGTTGAAAGACAAGCCCTGAATGAAGCAAGAGAGGGGGAGAAGCATGGTCACTATCACATGCCAGAAACTCGAGGACTCTGCCTTTCGGAAGAGCAGACGATCAGCAGCATCTCGAGACGACCGAGACTTGGGGCAGGAAATAGAGCGGTCGACATGAGAACACAATCATACAAATTGACCAGACGTTGCGATGTGACGGCAATTCTCATTTTATTCGGACTTCCAAGATTGCTTACTGGATCGATCCTAGCTCACGAGATGATGCATGCATGGCTGCGGCTTAAAGGCTACCGAACCCTAAGTCAAAACGTCGAAGAAGGTATATGTCAGGTTATGGCATACATGTGGTTGCATTCTGAACTCACTTCGGCGTCAGCCTCATCCTCATCTTCAACATCTAGAAAAGGGAAAAGACCCCCTTTTGAGATGAAGCTCGGCGAGTTCTTCAAGCACCAGATTGAATCCGACATCTCGCCAGTTTACGGAGACGGGTTTAGGGCAGGTCACCAAGCAGTGCAGAAGTATGGTCTTCAGAAGACCCTAAACCATATATGGATGACTGGTACTTTTCCATTTTGA 1455 0.4454 MGWLSKFFKGSDQKISEGHYHSYYNGDADSYLPSTSGVTNDVWPENENEDIDRAIALSLAEQNHRGNHVNDYRSQLEEDEQLARAIEESLNLESPPKYGNENMYQPHPAVPIPVPVYFPMGSSFLHNRICAGCHTEIGYGRYLNCLNAFWHPECFRCHACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWVQKYCPSHEHDNTPRCCSCERMEPRETGYIGLNDGRKLCLECLDSAIMDTSECQPLYVDIQRFYESLDMKLEQQIPLLLVERQALNEAREGEKHGHYHMPETRGLCLSEEQTISSISRRPRLGAGNRAVDMRTQSYKLTRRCDVTAILILFGLPRLLTGSILAHEMMHAWLRLKGYRTLSQNVEEGICQVMAYMWLHSELTSASASSSSSTSRKGKRPPFEMKLGEFFKHQIESDISPVYGDGFRAGHQAVQKYGLQKTLNHIWMTGTFPF* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2853 484 Coils Coil 69 89 - -
Ahy6g2853 484 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 126 155 - -
Ahy6g2853 484 ProSiteProfiles LIM domain profile. 128 188 IPR001781 -
Ahy6g2853 484 CDD LIM_DA1 130 182 - -
Ahy6g2853 484 ProSitePatterns LIM zinc-binding domain signature. 130 164 IPR001781 -
Ahy6g2853 484 Pfam Protein DA1 280 478 IPR022087 -
Ahy6g2853 484 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 77 96 IPR003903 -
Ahy6g2853 484 Pfam Ubiquitin interaction motif 77 90 IPR003903 -
Ahy6g2853 484 Pfam Ubiquitin interaction motif 47 62 IPR003903 -
Ahy6g2853 484 Pfam LIM domain 130 184 IPR001781 -
Ahy6g2853 484 PANTHER PROTEIN DA1-RELATED 2 1 484 IPR045218 -
Ahy6g2853 484 SMART uim 77 96 IPR003903 -
Ahy6g2853 484 SMART uim 46 65 IPR003903 -
Ahy6g2853 484 PANTHER PROTEIN DA1-LIKE 1 484 - -
Ahy6g2853 484 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 46 65 IPR003903 -
Ahy6g2853 484 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 156 211 - -
Ahy6g2853 484 Gene3D Cysteine Rich Protein 123 189 - -
Ahy6g2853 484 SMART lim_4 129 181 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2853 Ahy-Chr6 114453930 114460594 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ahy6g2853 DA1-like 7.00E-96 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3608 16 153757935 153764599 Ahy6g2853 6 114453930 114460594 hybridization