Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2843 ATGGCTATGAGAGGGGATGGGGAAGAAGCCACCGGTGTCTCGCGTCCCCCGGCGGGAATGCACTCGGAACGGACGCCCTCGGCCGACTTCTTATCGGACAATGAGCTCTCCATGCAATCCAACACCGCCGCCTCCCCCATGAGCCCTTACTATGATCCTGGCCGCCTCAGCGGCGAGGGATCCCCATTGATGATGTCACCATGGAACCAAACCGCAAATTCGCGATTTTCAAAGGAATTATGCTCCCAAGGCGGCGAAAGCACCGCACAAAGTGCTCTCCTGGGCTCCCTGGTCCGGGAGGAGGGACACATATACTCCTTGGCTGCCACCGGTAACCTCCTTTACACTGGCTCCGAGAGCAAGAACATCCGTGTGTGGAAGAACCTCCAAGAATTCTGTGGCTTCAAATCAAACAGTGGTTTGGTTAAGGCCATCATAATATCTGGACATAAAATCTTCACTGGTCACCAAGATGGTAAAATTCGTGTTTGGAAGGTTAACCCTAAGGCACCAAATGTTCACAAACGCGCAGGAACGTTGCCAACTTTGAAAGATATACTCAAGAGTTCTCTCAAACCAAGTAACTACATTGAAGTTCGGAAAAATCGTTCAGCACTTTGGATTAAGCATTCTGATGCTGTTTCCGCCTTAAGCCTTTCTCATTGTAAAACATTGCTCTATTCAGCTTCATGGGATAGAAGCATAAAGGTGTGGCGCATCTCCGATAAGAGGTGCATGGAATCCATCCCGGCTCACCAAGACACGGTGAATTCCGTGGTGTGCGGCGTTGATGGCCTCGTCTTCTCCGGCTCTGCCGATGGAACCGTTAAGATGTGGAAGCGGGAAACTCCCTCCTCCCGCTCCACCAAGTGCACCAAACACACCAATGCACAAACCCTGCTCAAGCAAGAATCCGCCGTCACCGCCCTCACCCTCGATGCCTCCTTCTCTACCCTCTACTGTGGCTCCTCCGACGGTCTCGTCAACTTCTGGGACAGTAACAACAACTTCGCCCATGGCGGCGTCCTTAAAGGCCACAAACTAGCCGTCCTTTGCCTCGCCGCTGCCGGAACCTTAGTTTTCAGCGGATCCGCCGACAAGACAATCTGCGTGTGGAAGAAGGAGGGAACGATCCACACGTGCGTGTCGATGTTGACGGGGCACGAGGGTCCAGTGAAGTGTCTGGCGGTGGAGGAAGACAAGGAGGCGAAGGCGCGTGGTGGTGAGAGGCGGTGGGTGTTGTACAGTGGGAGCTTGGATAAGTCTGTAAAGGTCTGGAGCGTTGCCGATGTTGGAGGTGGTGATAATCAGGAGCAGCAGCGCCACCACCGTATGTTTTCTGATTCAGATTCAATACCATTTGCTGAATCTGTTAGTAGCTACTCTTCTTCGTGCCGGAGCAATAACAGAAAATAA 1416 0.5268 MAMRGDGEEATGVSRPPAGMHSERTPSADFLSDNELSMQSNTAASPMSPYYDPGRLSGEGSPLMMSPWNQTANSRFSKELCSQGGESTAQSALLGSLVREEGHIYSLAATGNLLYTGSESKNIRVWKNLQEFCGFKSNSGLVKAIIISGHKIFTGHQDGKIRVWKVNPKAPNVHKRAGTLPTLKDILKSSLKPSNYIEVRKNRSALWIKHSDAVSALSLSHCKTLLYSASWDRSIKVWRISDKRCMESIPAHQDTVNSVVCGVDGLVFSGSADGTVKMWKRETPSSRSTKCTKHTNAQTLLKQESAVTALTLDASFSTLYCGSSDGLVNFWDSNNNFAHGGVLKGHKLAVLCLAAAGTLVFSGSADKTICVWKKEGTIHTCVSMLTGHEGPVKCLAVEEDKEAKARGGERRWVLYSGSLDKSVKVWSVADVGGGDNQEQQRHHRMFSDSDSIPFAESVSSYSSSCRSNNRK* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2843 471 Pfam WD domain, G-beta repeat 381 427 IPR001680 GO:0005515
Ahy6g2843 471 Pfam WD domain, G-beta repeat 210 238 IPR001680 GO:0005515
Ahy6g2843 471 Pfam WD domain, G-beta repeat 244 280 IPR001680 GO:0005515
Ahy6g2843 471 Pfam WD domain, G-beta repeat 341 373 IPR001680 GO:0005515
Ahy6g2843 471 Pfam WD domain, G-beta repeat 101 127 IPR001680 GO:0005515
Ahy6g2843 471 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 29 450 IPR045182 -
Ahy6g2843 471 Gene3D - 340 470 IPR015943 GO:0005515
Ahy6g2843 471 SMART WD40_4 293 332 IPR001680 GO:0005515
Ahy6g2843 471 SMART WD40_4 90 127 IPR001680 GO:0005515
Ahy6g2843 471 SMART WD40_4 336 373 IPR001680 GO:0005515
Ahy6g2843 471 SMART WD40_4 128 165 IPR001680 GO:0005515
Ahy6g2843 471 SMART WD40_4 201 239 IPR001680 GO:0005515
Ahy6g2843 471 SMART WD40_4 378 427 IPR001680 GO:0005515
Ahy6g2843 471 SMART WD40_4 242 280 IPR001680 GO:0005515
Ahy6g2843 471 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 207 241 - -
Ahy6g2843 471 MobiDBLite consensus disorder prediction 1 28 - -
Ahy6g2843 471 ProSiteProfiles Trp-Asp (WD) repeats profile. 249 289 IPR001680 GO:0005515
Ahy6g2843 471 SUPERFAMILY WD40 repeat-like 100 429 IPR036322 GO:0005515
Ahy6g2843 471 Gene3D - 201 339 IPR015943 GO:0005515
Ahy6g2843 471 PRINTS G protein beta WD-40 repeat signature 226 240 IPR020472 -
Ahy6g2843 471 PRINTS G protein beta WD-40 repeat signature 414 428 IPR020472 -
Ahy6g2843 471 PRINTS G protein beta WD-40 repeat signature 267 281 IPR020472 -
Ahy6g2843 471 Gene3D - 86 200 IPR015943 GO:0005515
Ahy6g2843 471 ProSiteProfiles Trp-Asp (WD) repeats profile. 343 373 IPR001680 GO:0005515
Ahy6g2843 471 ProSiteProfiles Trp-Asp (WD) repeats profile. 207 248 IPR001680 GO:0005515
Ahy6g2843 471 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 332 IPR001680 GO:0005515
Ahy6g2843 471 CDD WD40 101 427 - -
Ahy6g2843 471 PANTHER PROTEIN JINGUBANG 29 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2843 Ahy-Chr6 114309453 114311669 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3598 16 153613458 153615674 Ahy6g2843 6 114309453 114311669 hybridization
Ahy17g2565 17 121300981 121304176 Ahy6g2843 6 114309453 114311669 PCT
Ahy8g0354 8 7345142 7347820 Ahy6g2843 6 114309453 114311669 PCT