Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2838 ATGGAAGGATCAGAGATTTCCCATCACAACAGATCCTGGGTTGAAGACATTTATTGGAACCATTTTCAGTTCCTCCATTTCGCAAAGTTTATGCCCAGCTCTTATAATCAGCACCTTGCACTTCCCAAAGCATTTTATGGTAATTTGAAGAAGAAGCTGCCAGAAAATGTGAGCCTTCGAGGTCCTGGTGGTGCCCTGTGGAATATAGGGTTGACAACAAGAGAAGATACCTTGTACTTCACACACGGTTGGAAACAGTTTGTGAAAGATCACTCCTTGATAGAGAATGATTTCCTGGTATTTAAGTTCAATGGTGAATCAACATTCGATGTTCTAATATTCGATGGGAAGAACTTCTGCGAGAAGGCTGCTGCTTATTTCGTTCGAAATGTCGGAAACGGGAATCCAGAAAATGGGATTGGACGCTTGACAATGAGAAAAGACACTGAGAACTCTAATGCTGGTGTAGCATGTGCATCGCCTCAGAAATCTGTGCATGTTAACAGTTTCCCAGTGCCAGACGCTGTGCCTGTACGCACCGAACCTCCTAGTGAGAGAAATTTTAATGGCGATGTTGAATTCTCCACCCCTAAAGAAGTTGTTAATGTAGATGGTGATGCCGGTGTTGAAGTTGATGCTAACGGAGTGACGATGTCAGAAGGTCGCACCCGCACTACTGGTAAAAGGATTAGGAAGCCGACTCAAGCTTTTAACCATTTCCAAACTAAGCGGAGACCAGTAAGGGTGACAAAAACATCTAATGCACATAAGGAAGTAGCAAACGTGGTAATCGATGCAGATGCAGATCCTGAACCTGCTTCCGCGGGTAAAAGTGAGGGTGGGAATTATGAATTATATGTCTCACAGAGGAGGCCTGTCACTGAAGAAGAGATGAATAGTACCCTTCAGATGGCTAAGGCAGCATGTACCGATGACAGCCTCTGTGTTGTCATGCGACCAACGCATGTTTATAAGAGATTCTTCGTGTCGCTCCCGAATAAGTGGATACTGCAACATATCCCTCCACGAACTCAAGACATTATATTGCGTGTGGTTCATAGCGAATGGCTTGCAAAATACAGCTACCATAACCCTAGAAACACCGGAGGACTGAGCGGAGGGTGGAAACGCTTTACCCTGGATAACAACCTGGAAGAGTACGACGTGTGTGTTTTCAAACCCGGAGGCCTGATGAACAACACATTGATCTTGGATGTCAACATTTTCAGAGTTGTTGAGGAGATTAAGCCTTTGACACAAGTGAGAGCTGCAGGATCAGCCAAAAAGAGTGGTAAGAAAAAGGCCTTAAAGGCCATCCAAATATAA 1326 0.4449 MEGSEISHHNRSWVEDIYWNHFQFLHFAKFMPSSYNQHLALPKAFYGNLKKKLPENVSLRGPGGALWNIGLTTREDTLYFTHGWKQFVKDHSLIENDFLVFKFNGESTFDVLIFDGKNFCEKAAAYFVRNVGNGNPENGIGRLTMRKDTENSNAGVACASPQKSVHVNSFPVPDAVPVRTEPPSERNFNGDVEFSTPKEVVNVDGDAGVEVDANGVTMSEGRTRTTGKRIRKPTQAFNHFQTKRRPVRVTKTSNAHKEVANVVIDADADPEPASAGKSEGGNYELYVSQRRPVTEEEMNSTLQMAKAACTDDSLCVVMRPTHVYKRFFVSLPNKWILQHIPPRTQDIILRVVHSEWLAKYSYHNPRNTGGLSGGWKRFTLDNNLEEYDVCVFKPGGLMNNTLILDVNIFRVVEEIKPLTQVRAAGSAKKSGKKKALKAIQI* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2838 441 Pfam B3 DNA binding domain 316 401 IPR003340 GO:0003677
Ahy6g2838 441 Pfam B3 DNA binding domain 27 115 IPR003340 GO:0003677
Ahy6g2838 441 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 138 - -
Ahy6g2838 441 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 229 420 IPR044837 -
Ahy6g2838 441 SMART B3_2 314 412 IPR003340 GO:0003677
Ahy6g2838 441 SMART B3_2 27 117 IPR003340 GO:0003677
Ahy6g2838 441 CDD B3_DNA 26 115 IPR003340 GO:0003677
Ahy6g2838 441 ProSiteProfiles B3 DNA-binding domain profile. 24 117 IPR003340 GO:0003677
Ahy6g2838 441 Gene3D - 292 414 IPR015300 -
Ahy6g2838 441 CDD B3_DNA 313 410 IPR003340 GO:0003677
Ahy6g2838 441 SUPERFAMILY DNA-binding pseudobarrel domain 314 401 IPR015300 -
Ahy6g2838 441 ProSiteProfiles B3 DNA-binding domain profile. 314 412 IPR003340 GO:0003677
Ahy6g2838 441 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 7 138 IPR044837 -
Ahy6g2838 441 Gene3D - 20 120 IPR015300 -
Ahy6g2838 441 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 229 420 - -
Ahy6g2838 441 SUPERFAMILY DNA-binding pseudobarrel domain 23 116 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2838 Ahy-Chr6 114211165 114214996 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy6g2838 B3 5.80E-11 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3592 16 153515170 153519001 Ahy6g2838 6 114211165 114214996 hybridization