LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy6g2733	ATGGCCCACCAAGACAACCCCACGCGCCCTCAGCGCGAGGCCAAAAAGAGGGCAGCAGCTGCACTCTCCGAGCTCCAAACCGGCGCGTCCAAGAAGAAGCGCGTCGTGTTGGGCGAACTCACTAACATCACCAACTCCAGCGTTGTACCACCACAACCACAACAACCTGCCAAGCCGGTTCTCGATAACCGCCGGTTTAATCAGAACGAGGAGAAAATAAAAACCACCAATACCAGGGGAAAGAAGAGAACGGTCGGGAAAAACCAGAAACCGGCGGTGACTCCACCGGAAACTGTTGACGCCGCAAAGAAGCCGGAAGTTACTGTTGATCCGCAATTATGTGCTCCTTATGTTTCTGATATCTACGATTATCTTCGTAAAATGGAGGAAGATCCAAGTAAGAGGCCACTACCGGATTATGTGCAGAAAGTGCAGAGGCATGTGAATGCAAACATGAGGGGTGTTCTTGTGGATTGGTTAGTAGAGGTTGCCGAGGAGTACAAGCTTGTTTCCGATACCCTTTACTTCTCAGTTTCATACATTGACAGATACTTGTCTTTGACTGCCTTATCAAGTCAAAAGCTGCAGTTGCTTGGTGTTTCAGCAATGCTTATTGCATCAAAATATGAGGAGATAAAGCCACCTGAGGTGGAAGAATTTTGTTACATTACAGACAACACATACACCAAGGATCAGGTTGTGGAGATGGAAGCTGATATATTGAAGTCTTTGAAGTTTGAATTGGGTGGTCCAACAGTAAAGACCTTTCTAAGGTGCATGCACATAAGATTCTCTAAAGTTGCTCAAGAGAGCAAAGATACATCAGACTTGCAATTTGAGTTTCTCACTAGCTACCTCGCGGAGCTCAGTTTGTTGGATTATAATTGTGTGAAATTTTTGCCTTCTTTGGTGGCAGCATCTGTTGTATTTCTAGCAAGATTTATGCTAAGCCCAAAGAAACATCCTTGGAATGCAGCACTTTATCAACTCACTAGATATAAACCAGCCGAATTGAAGGAATGTGCTCAAAATATACATGATCTGTACCTCAGCAGGAGAGGTGGCTCTTTGCAAGCTGTGAGAGAGAAATACAAACAACATAAGTTCAAATGCGTGGCCACAACTCCGTCACCTCCAGAGATTCCCGTTTCTTATTTTGAATTTAGAGTGGCAGATCCATAG	1182	0.4492	MAHQDNPTRPQREAKKRAAAALSELQTGASKKKRVVLGELTNITNSSVVPPQPQQPAKPVLDNRRFNQNEEKIKTTNTRGKKRTVGKNQKPAVTPPETVDAAKKPEVTVDPQLCAPYVSDIYDYLRKMEEDPSKRPLPDYVQKVQRHVNANMRGVLVDWLVEVAEEYKLVSDTLYFSVSYIDRYLSLTALSSQKLQLLGVSAMLIASKYEEIKPPEVEEFCYITDNTYTKDQVVEMEADILKSLKFELGGPTVKTFLRCMHIRFSKVAQESKDTSDLQFEFLTSYLAELSLLDYNCVKFLPSLVAASVVFLARFMLSPKKHPWNAALYQLTRYKPAELKECAQNIHDLYLSRRGGSLQAVREKYKQHKFKCVATTPSPPEIPVSYFEFRVADP*	394

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy6g2733	393	ProSitePatterns	Cyclins signature.	153	184	IPR006671	-
	Ahy6g2733	393	SUPERFAMILY	Cyclin-like	110	248	IPR036915	-
	Ahy6g2733	393	PANTHER	CYCLINS	24	389	IPR039361	-
	Ahy6g2733	393	SMART	cyclin_7	158	242	IPR013763	-
	Ahy6g2733	393	SMART	cyclin_7	255	347	IPR013763	-
	Ahy6g2733	393	Pfam	Cyclin, C-terminal domain	251	377	IPR004367	-
	Ahy6g2733	393	SMART	Cyclin_C_2	251	378	IPR004367	-
	Ahy6g2733	393	MobiDBLite	consensus disorder prediction	1	28	-	-
	Ahy6g2733	393	Pfam	Cyclin, N-terminal domain	120	248	IPR006671	-
	Ahy6g2733	393	CDD	CYCLIN	152	241	IPR013763	-
	Ahy6g2733	393	Gene3D	-	120	374	-	-
	Ahy6g2733	393	MobiDBLite	consensus disorder prediction	1	19	-	-
	Ahy6g2733	393	PIRSF	Cyclin_A_B_D_E	1	385	IPR039361	-
	Ahy6g2733	393	Gene3D	-	136	249	-	-
	Ahy6g2733	393	SUPERFAMILY	Cyclin-like	251	380	IPR036915	-
	Ahy6g2733	393	MobiDBLite	consensus disorder prediction	66	97	-	-
	Ahy6g2733	393	CDD	CYCLIN	251	346	IPR013763	-
	Ahy6g2733	393	PANTHER	CARBOXY-TERMINAL DOMAIN CYCLIN	24	389	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy6g2733	Ahy-Chr6	112902010	112905195	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy6g2733	1	387	Core Cell Cycle Gene Families	AT1G47230	56.041	1.15e-148	424

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy16g3484	16	152169688	152172930	Ahy6g2733	6	112902010	112905195	hybridization
	Ahy6g2733	6	112902010	112905195	Ahy17g3249	17	134582828	134584868	PCT
	Ahy17g3249	17	134582828	134584868	Ahy6g2733	6	112902010	112905195	PCT