Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2711 ATGGGTAGATGGACAGTGGAGGTTAGAGAGATGTTGCACCCCATAACTAATTCGGTTAAGCAAAAAATTATGTCCTATAATCCCAATGTTCAAGCAGGAAAGTGGGTTGGTTGGAGCACCGATCGCTCATTCAGCGGCACTAACCACTCACCAATGGCGTCCGCCGAGCAGCCACTGAAGAAGCGAAAGCATTACGATACTCTCCCGGAATCCCCACCGCCGCCACCGCCATCCGAAGAAGTTCCACCACCGCCTTCGCCGCCACAATCTCCTCAAACCCTACCTCGTCCGCCTACTCCTCCTCCTCCGCCTCTGTCACAGGATGAGGTCGTCACCAAGCGGAGGAACAAAGATGAGGTTCGAACCGTGTTTGAGTGCTACCGTCGCATCAAGCTCTTCTTGTCAAAGAAGGAGAGTGCTTTCATCCATGACATTGAACAGAGCTTCTTCGCTCTCATCAATGCTTCCAGAGGTTGTTTGAGTGGACAAAGAATCGCGGCTGATGTTATTCCTCGATATGCATTCCACTGTCCAACAGCTTTAGAAGCTGCTGCTAAAGTGGTTATCAATATGTATAACTGGAGTTCCACACTAATCAGTAGAGGAGAAGATGCTGATGGTGTTGCATTTGAAACTGCTAGAGCTTGTATTTTTGGCTTAGCTGATATTTGCTGTGCTGCTTCTTCAGTGGCACCAAAATCTGCTGTAATCAGAGGAATTTGCTCTGCAGTTTTTCAGAATGTGCTATCCTTTTTCATATCTTTACTTGAGGGAAAGGACGCCTTACAGGTGTTCGATAAGAGTTTCCTGAAAATGCAAGATTCCCCTGATGAATTTTCTAAGTTGAAGCAAAAAGTTTTAGATGAAGATGAGCCCTCATTGACTAAATTGTCAAAACTCCATGCAGTATGTTTATTTTGGATATTCTTCTCTTGCCCAAAAGACATGCTTGCAGCTTGTTTGGAGCTCTTAGGCTCTGCCACAAAGGAGGGTGCCTCTGAACAAGGACAATGTTTTCTGAGCCTGGTGACTAGAAATGTTTTGGTTGATGAAGCAGTTTGCCTTCTGGATAATGTTAATGGCGGATCTAAGCCAGGTACAGGTTCAACAGATTCAGCTATCCGCGAAAACGAGGTTGATGAGGAAATAATGACAGATGTCATCCGAGTTGCCGATGTTGATTCGTCTATTCCAAAGAGTTGCTTGCTCACACTGGTCCTCGACAAAGATCCCTCACTACAGAAATGGATGTCACGCAAATCTAAGAAGTTATTGGACTTGCCTACTACTGCTTCAATGGAAATTACAGCAGTACTTCTAGGAATTCTTGGAAAGTTTGTTCCACAAACTGATTTGGAAGACTACCAACCAGATAGTGATGAAGATAGATCTGATTCTTTGATTTACACAAATAGGAACTATGCGGTACCTAGGATTTCAGAGGAACGTGACAGTATTGGTGAAACATCTGGAAGAGTTTCTCTTGGCACCAACCCTGTATCAAAAGTAGGTTCGCATTTCGACAATGGAGCTTCAAGGCCCATGGGCATTGAGATGGGGGAGGGAGGGAGTATGTCCCATGCTAGATGTTCCACACCTAGGGATTCAGCAACCCATCAAATAACCTCATCTTCAATGAAGACACCATTTGGCTCTAGGAGTAATTCATTTGAAGCTGCTTCAACAAAAAGTCAAACTGTCTGGTGCCTTGATGGGGATCCTGCTGCCATGGATATTGTCTCTGCTTCAACAAGGCTCTGGGTTGGTTTTATACCACCTGACGTGCCTGAAAGCCATATTAGGTTTCAATCAGAAAGATATGGTCAAATTGAACGGTTTGTTTTCTTCCCCATGAAAGGTTTTGCCTTTGTTGAGTACAGAAGAATCATTGATGCAATCAAAGCTAGACACTATCTACCGGGAAACTTCCCGTGTCGTGTAAGATTCATCGATACAGGATTTGGAACTAGGGGTGCAATGAATGGTGTTGCAATTGGCTCTAGTTCTCATATCTATGTTGGAAATATTTCTTCTCAATGGGCCAAGGATGAGATCCTACATGAATCAAGAAAAGTAATCCATAAAGGTCCTCCTGCACTTATTGATCTCAGCTGTGAGTGTGCATTACTTATGGAATTTGAAACTCCTGAAGAAGCTACCTCTGTCATGTTGCGTCTGAGACAGTTTCGAAGAGAAAGAAGCAACTATAACTTACATTTTGGCCCAGGAACAGTTAATGCTGGAATTGGGCACCTGTATATGGACGGTTCAAGGTCTGCATCTGCCCCTTCCCATCCTGACCTTAAAGTTAGCATCCCAACAAACATGTCACATGGTATTTCTGGATCACCTCATGCTCGAACGTTATCAGCTGGATCACCTCATGCTCGAACCTTACCCGTGAGCCCTGCTGACAGTTCTCGCACAAGGATGTCTCACTTGTCTTCGTTGCTAGCTTCATTGTGTACAAAATACAATATTAATCAAAACATAGGTCTCCATGATCACTATATGACTGGAACTGGTAACAGTTATGCTCCTTCGATGCGTGATGAAGATACAGCACCATCGAGTACTTTGTGGATAACTATTCCATGGAGTAGCTCTCAATTCCTCACAGATGATGAACTAATGACTATCTGCAATCTTGCTATTGGAGGCTCTGGCTCCATTTTGCGCTTGACACAGGCAAACATGCAGATGCCGTGTGGTTGGTTTGTTGAATGCAGTAATACTGATGGTGCAGTTTCTGTTCTAAAGAATCTTCGTAGTTGTCCAGGGTTGTTCTTCCAAGTAGAATTCAGTAAATCTGGAAATCAGACTGCCGGACCTTCTTCAGCCAAACCAGAGGGCAACTCCATGGAACTAGTATCCCCCAGAACAAATTCCCAGAATCACAGTAGTGGAATACACCGTGCACCTCCACCCCAGTCGAACTGGCATTTTCCTGGTTCCAGTAACATGCCAGAAGTTGGAGCAAGGAAAACTGATGGTTATGATAATGTATCACTAGACACTCATCAAGGAGCTAACATTCAACATATGTACTCTGGAACTCAAGGACCTTCCATTCCGCCACCACAACAAATTCAGTCAGCTCCCTTCATTCGCCCTGTTTATGCCCCTCCAAATGGTCCGTGGGATCCGCGTGGAATAAATAATCCTTTACCTGCCAATCACTTCACGCCTGGAGTGATGCCTAATAATCATTTACCATTTATACCTGCTTCAGTAACTCCACTTGCTCACATCCAGGGAACCCCAATGCATCCTTATGGCCAGCTGATGCCCCCACCAGTAATGGCACCACCTTTGGCTTCCTTACCACATCCTCAGCTTGAAATTCCACCTCCACCTCCACCTCCACCTCCACCTGCACGTCTGCCTTCTCCACCACCCTTGCCCCAAACTCAGCCACCCATGGTTCCTCCACCACCTGGTTCTCCTCCACCTCCTCCTCCACCATTGCCTGCTCAGGAAGCAGTTAGTATGGAATATTCAGGGCAGTCTCTGCAGTATCAGTGGCAGGGGGCTCTTTGTAAAAGCGGGGTTAACTACTGCACAATTTATGCATGCCGAGCAGATTCAAATGTTTGCAAATACACAAATGCCACACCTGAACCTTCTGAGTGGCCCACAAAACTAGACATGACTAAACGCACTGATATTCGACATGTGAAATCAACATTTGCAGCTACACCACCTAACAGGAGGGAAGTGTGCCGTTTAATCCCATCTTCCCCAAGTGAACACAAACGGTTTCAGGATTTCATAACATACTTAAAGCAGAGGGATTGTGCCGGAGTCATTAAAATCCCAGCCGCAAAATCCATGTGGGCAAGGCTGCTCTTCATACTCCCATACTCGCCTGAAACATGCACTTTGCTTTCTATTGCACCACATCCATCTGATTGCCTCATCGCTTTGGTTCTTCCAAAAGAAATGAACTTTGAGTGGGCATGA 3963 0.4527 MGRWTVEVREMLHPITNSVKQKIMSYNPNVQAGKWVGWSTDRSFSGTNHSPMASAEQPLKKRKHYDTLPESPPPPPPSEEVPPPPSPPQSPQTLPRPPTPPPPPLSQDEVVTKRRNKDEVRTVFECYRRIKLFLSKKESAFIHDIEQSFFALINASRGCLSGQRIAADVIPRYAFHCPTALEAAAKVVINMYNWSSTLISRGEDADGVAFETARACIFGLADICCAASSVAPKSAVIRGICSAVFQNVLSFFISLLEGKDALQVFDKSFLKMQDSPDEFSKLKQKVLDEDEPSLTKLSKLHAVCLFWIFFSCPKDMLAACLELLGSATKEGASEQGQCFLSLVTRNVLVDEAVCLLDNVNGGSKPGTGSTDSAIRENEVDEEIMTDVIRVADVDSSIPKSCLLTLVLDKDPSLQKWMSRKSKKLLDLPTTASMEITAVLLGILGKFVPQTDLEDYQPDSDEDRSDSLIYTNRNYAVPRISEERDSIGETSGRVSLGTNPVSKVGSHFDNGASRPMGIEMGEGGSMSHARCSTPRDSATHQITSSSMKTPFGSRSNSFEAASTKSQTVWCLDGDPAAMDIVSASTRLWVGFIPPDVPESHIRFQSERYGQIERFVFFPMKGFAFVEYRRIIDAIKARHYLPGNFPCRVRFIDTGFGTRGAMNGVAIGSSSHIYVGNISSQWAKDEILHESRKVIHKGPPALIDLSCECALLMEFETPEEATSVMLRLRQFRRERSNYNLHFGPGTVNAGIGHLYMDGSRSASAPSHPDLKVSIPTNMSHGISGSPHARTLSAGSPHARTLPVSPADSSRTRMSHLSSLLASLCTKYNINQNIGLHDHYMTGTGNSYAPSMRDEDTAPSSTLWITIPWSSSQFLTDDELMTICNLAIGGSGSILRLTQANMQMPCGWFVECSNTDGAVSVLKNLRSCPGLFFQVEFSKSGNQTAGPSSAKPEGNSMELVSPRTNSQNHSSGIHRAPPPQSNWHFPGSSNMPEVGARKTDGYDNVSLDTHQGANIQHMYSGTQGPSIPPPQQIQSAPFIRPVYAPPNGPWDPRGINNPLPANHFTPGVMPNNHLPFIPASVTPLAHIQGTPMHPYGQLMPPPVMAPPLASLPHPQLEIPPPPPPPPPPARLPSPPPLPQTQPPMVPPPPGSPPPPPPPLPAQEAVSMEYSGQSLQYQWQGALCKSGVNYCTIYACRADSNVCKYTNATPEPSEWPTKLDMTKRTDIRHVKSTFAATPPNRREVCRLIPSSPSEHKRFQDFITYLKQRDCAGVIKIPAAKSMWARLLFILPYSPETCTLLSIAPHPSDCLIALVLPKEMNFEWA* 1321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2711 1320 Gene3D - 575 656 IPR012677 -
Ahy6g2711 1320 SMART rrm1_1 585 648 IPR000504 GO:0003723
Ahy6g2711 1320 MobiDBLite consensus disorder prediction 1103 1159 - -
Ahy6g2711 1320 MobiDBLite consensus disorder prediction 937 985 - -
Ahy6g2711 1320 PANTHER NUCLEIC ACID BINDING PROTEIN 52 1319 - -
Ahy6g2711 1320 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 52 1319 - -
Ahy6g2711 1320 SUPERFAMILY RNA-binding domain, RBD 573 643 IPR035979 GO:0003676
Ahy6g2711 1320 MobiDBLite consensus disorder prediction 937 999 - -
Ahy6g2711 1320 MobiDBLite consensus disorder prediction 484 556 - -
Ahy6g2711 1320 MobiDBLite consensus disorder prediction 781 808 - -
Ahy6g2711 1320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 586 641 IPR000504 GO:0003723
Ahy6g2711 1320 MobiDBLite consensus disorder prediction 490 505 - -
Ahy6g2711 1320 MobiDBLite consensus disorder prediction 1103 1160 - -
Ahy6g2711 1320 Pfam SPOC domain 1169 1311 IPR012921 -
Ahy6g2711 1320 CDD RRM3_Spen 586 651 - -
Ahy6g2711 1320 MobiDBLite consensus disorder prediction 529 556 - -
Ahy6g2711 1320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 584 678 IPR000504 GO:0003723
Ahy6g2711 1320 MobiDBLite consensus disorder prediction 46 114 - -
Ahy6g2711 1320 MobiDBLite consensus disorder prediction 69 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2711 Ahy-Chr6 112666335 112677860 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3459 16 151899325 151910415 Ahy6g2711 6 112666335 112677860 hybridization