Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1246 ATGGCTCGCCTCTCCCTCCTCCTCCTCCTCGTCGCCGCCGTCGCAACCGCCGTCGACGACCAAGCCGATCCCTTGATCCGTCAAGTAACCGATGGAGACCATCACATGCTCAACGCCGAGCACCACTTCACAACCTTCAAGACTAAGTTCGGAAAGTCTTATGCCACTCAAGAAGAGCACGATTACCGCTTTGGCGTCTTCCGGGCGAACCTGAGGAGGGCGAAGCTGCACGCGAAGCTGGATCCGTCGGCGGAGCACGGTGTCACGAAATTCTCCGATCTGACGCCAGAGGAGTTCAAGAGGCAGTACCTTGGGTTGAAGCCGCTGCGGCTTCCGTCGACCGCTAACAAGGCTCCAATCCTGCCGACGAGCGATCTTCCAGAGAATTTCGATTGGCGTGACAAGGGTGCTGTTACTCCAGTCAAGAACCAGGGCTCTTGTGGTTCATGTTGGGCGTTTAGCACGACTGGGGCTTTGGAAGGCGCTCATTATCTGTCCACCGGAGAGCTTGTCAGCCTTAGTGAGCAACAGCTTGTAGACTGTGACCATGTGTGTGATCCAGAAGAATATGGAGCATGTGACGCAGGCTGCAATGGTGGGTTGATGAACAATGCTTTCGACTACATACTCCAGGCTGGAGGAGTACAGACAGAGAAGGACTATCCTTACAGTGGAAGAGACGAGACCTGCAAATTCGACAAGAGCAAGGTCGCAGCTACAGTTGCGAATTTCAGTGTGGTTTCCCTTGATGAAGACCAAATTGCTGCAAATCTAGTGAAGCATGGCCCTCTTGCAGTTGGTATCAATGCAATATTCATGCAGACATACATAGGGGGAGTCTCATGCCCCTACATCTGCGGCAAGAATCTGGATCATGGCGTGCTCCTAGTGGGTTATGGCGCGGCCGGATATGCTCCCATTCGCTTCAAGGACAAGCCATTCTGGATCATCAAGAATTCATGGGGAGAGAGCTGGGGAGAGGATGGATACTACAAGATCTGCAGGGGTAAGAATGTGTGTGGAGTGGATTCCATGGTCTCAAGTGTAGTAGCTACTACATTTACATCTAGCAACAATTAA 1080 0.5241 MARLSLLLLLVAAVATAVDDQADPLIRQVTDGDHHMLNAEHHFTTFKTKFGKSYATQEEHDYRFGVFRANLRRAKLHAKLDPSAEHGVTKFSDLTPEEFKRQYLGLKPLRLPSTANKAPILPTSDLPENFDWRDKGAVTPVKNQGSCGSCWAFSTTGALEGAHYLSTGELVSLSEQQLVDCDHVCDPEEYGACDAGCNGGLMNNAFDYILQAGGVQTEKDYPYSGRDETCKFDKSKVAATVANFSVVSLDEDQIAANLVKHGPLAVGINAIFMQTYIGGVSCPYICGKNLDHGVLLVGYGAAGYAPIRFKDKPFWIIKNSWGESWGEDGYYKICRGKNVCGVDSMVSSVVATTFTSSNN* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1246 359 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 290 300 IPR025660 -
Ahy6g1246 359 PRINTS Papain cysteine protease (C1) family signature 292 302 IPR000668 GO:0006508|GO:0008234
Ahy6g1246 359 PRINTS Papain cysteine protease (C1) family signature 314 320 IPR000668 GO:0006508|GO:0008234
Ahy6g1246 359 PRINTS Papain cysteine protease (C1) family signature 144 159 IPR000668 GO:0006508|GO:0008234
Ahy6g1246 359 PANTHER CYSTEINE PROTEASE RD19C-RELATED 19 351 - -
Ahy6g1246 359 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 19 351 - -
Ahy6g1246 359 Pfam Papain family cysteine protease 126 348 IPR000668 GO:0006508|GO:0008234
Ahy6g1246 359 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 144 155 IPR000169 -
Ahy6g1246 359 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 314 333 IPR025661 -
Ahy6g1246 359 SUPERFAMILY Cysteine proteinases 40 349 IPR038765 -
Ahy6g1246 359 CDD Peptidase_C1A 127 349 IPR039417 -
Ahy6g1246 359 Pfam Cathepsin propeptide inhibitor domain (I29) 43 99 IPR013201 -
Ahy6g1246 359 Gene3D Cysteine proteinases 18 350 - -
Ahy6g1246 359 SMART pept_c1 126 350 IPR000668 GO:0006508|GO:0008234
Ahy6g1246 359 SMART Inhibitor_I29_2 43 99 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1246 Ahy-Chr6 18590157 18592852 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0099 16 965801 968504 Ahy6g1246 6 18590157 18592852 hybridization
Ahy6g1246 6 18590157 18592852 Ahy17g2326 17 112203993 112205990 PCT
Ahy6g1246 6 18590157 18592852 Ahy8g0090 8 1544481 1546399 PCT
Ahy17g2326 17 112203993 112205990 Ahy6g1246 6 18590157 18592852 PCT
Ahy8g0090 8 1544481 1546399 Ahy6g1246 6 18590157 18592852 PCT