Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2549 ATGGCAGAGCTGGATCCATCCAAGAAAGTAGCTGATAGGTATCTCAAGCGTGAGGTTCTTGGTGAAGGTACCTATGGAGTCGTTTACAAAGCCATTGATACACAGACGGGACAGACGGTTGCGATTAAGAAGATTCGGCTTGGTAAGCAGAAAGAAGGGGTGAATTTTACAGCACTTCGAGAAATAAAATTGCTCAAAGAGCTCAAAGATCCAAATATTATTGAGTTGATTGATGCATTCCCACACAAAGGGAACTTGCATCTTGTGTTTGAGTTCATGGAGACTGACCTTGAAGCTGTGATACGGGACAGAAATATTTTTCTTTCGCCGGGGGATATAAAATCTTACCTTCAGATGACACTAAAAGGTCTTGCAGTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAACCAAATAACTTGTTGATAGGGTCTAATGGACAGCTAAAACTTGCAGATTTTGGTTTAGCACGGATATTTGGAAGCCCAGATCGCAGGTTCACACATCAGGGTTCAAGTGATATTGATCAATTAGGGAAGATTTTTGCAGCATTTGGAACCCCATCACCTGCTCAGTGGCCTGATATGGTATATCTTCCTGACTATGTTGAATACCAACATGTTCCTGCTCCACCTTTGCGTTCTTTATTTCCAATGGCAAGTGATGATGCTTTAGATTTGTTGTCAAAGATGTTTACATATGATCCGAATGCTAGAATTTCAGCTCAGCAGGCATTAGAACATAGGTATTTCTCTTCCGCACCTCTGCCTACAGTTCCAGAGAAGCTTCCAAGACCTGCCCCTAAGAAGGAATCTAAAGCTTCAGATGTCGATTCACAGGATGGTCCTACTGTGTTATCACCTCCAAGAAAGTCGAGGAGAATTATGCCGGGGCGTGATGGATTTGAAGGAAATTCTTTGCAGGAAGATAAGTTTGATGACAATGCCGGTAATTTCCGGCAAACAGTAGCTGATAATACAGGAAAGAATGGGCCAGCACCGATGTCACTAGATTTTTCTCTCTTCGGATTAAAACCTCCTAATAGACCTACAATTACAAGCGCTGACAGATCGCATTTAAAAAGAAAATTAGATTTGGAATTCGGCAACCAGAATGACTAA 1125 0.4178 MAELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPGDIKSYLQMTLKGLAVCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQGSSDIDQLGKIFAAFGTPSPAQWPDMVYLPDYVEYQHVPAPPLRSLFPMASDDALDLLSKMFTYDPNARISAQQALEHRYFSSAPLPTVPEKLPRPAPKKESKASDVDSQDGPTVLSPPRKSRRIMPGRDGFEGNSLQEDKFDDNAGNFRQTVADNTGKNGPAPMSLDFSLFGLKPPNRPTITSADRSHLKRKLDLEFGNQND* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2549 374 MobiDBLite consensus disorder prediction 254 335 - -
Ahy5g2549 374 Pfam Protein kinase domain 16 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy5g2549 374 CDD STKc_CDK7 13 265 IPR037770 GO:0005675|GO:0008353|GO:0070985
Ahy5g2549 374 ProSiteProfiles Protein kinase domain profile. 14 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy5g2549 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Ahy5g2549 374 PANTHER CELL DIVISION PROTEIN KINASE 171 315 - -
Ahy5g2549 374 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Ahy5g2549 374 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 171 - -
Ahy5g2549 374 PANTHER CYCLIN-DEPENDENT KINASE D-2 171 315 - -
Ahy5g2549 374 MobiDBLite consensus disorder prediction 294 317 - -
Ahy5g2549 374 SUPERFAMILY Protein kinase-like (PK-like) 10 259 IPR011009 -
Ahy5g2549 374 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Ahy5g2549 374 PANTHER CELL DIVISION PROTEIN KINASE 9 171 - -
Ahy5g2549 374 Gene3D Transferase(Phosphotransferase) domain 1 95 170 - -
Ahy5g2549 374 Gene3D Transferase(Phosphotransferase) domain 1 171 268 - -
Ahy5g2549 374 SMART serkin_6 14 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2549 Ahy-Chr5 101066156 101070377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2549 4 369 Core Cell Cycle Gene Families AT1G73690 65.441 0.0 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Ahy5g2549 Pkinase 2.70E-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2549 K02202 - gmx:100814263 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2682 15 143135116 143139559 Ahy5g2549 5 101066156 101070377 hybridization
Ahy13g3976 13 139169424 139172660 Ahy5g2549 5 101066156 101070377 PCT
Ahy3g3703 3 136379466 136382648 Ahy5g2549 5 101066156 101070377 PCT
Ahy5g2549 5 101066156 101070377 Ahy13g3976 13 139169424 139172660 PCT
Ahy5g2549 5 101066156 101070377 Ahy3g3703 3 136379466 136382648 PCT