Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0602 ATGAATACCGCTACTAGTACAACGGCAGTTACAAGAAAGGATATGGATCGGATCAAGGGCCCATGGAGCCCGGAAGAGGACGACGCTCTGCAGAAGCTGGTGGAGAAGCACGGGCCTAGGAACTGGTCACTCATAAGCAAATCCATCCCGGGCCGCTCCGGCAAGTCTTGCAGGCTCCGATGGTGCAACCAGCTCTCCCCACAGGTGGAGCATCGGGCCTTCACCCCCGAAGAGGACGACACCATAATCAGAGCTCACGCTCGCTTCGGCAACAAGTGGGCTACCATAGCCCGACTCCTCTCCGGCAGAACCGACAACGCCATTAAGAACCACTGGAACTCCACCCTCAAACGCAAGTGCGCCTCCATGGGCCCCATCGACGACCCTCACTTCGCTCAGCCACTCAAACGCTCCGTCAGCGCCGGCGCCGCCGTACCCGTATCAACGGGCCTCTACATGAACCCTCCCACACCCGGAAGTCCCTCCGGATCCGATGTGAGCGAGTCAAGCGTCCCCGCTGCCTCCACATCGCACGTTTTCCGACCTGTGCCTAGAGCCGGCGGCGTCGTACCGCCGGTAGAAACGACGTCGTCTTCCTATGACCCTCCCACTTCATTGTCCCTTTCCCTTCCTGGGGTCGACTCTAATTCGGAAGTCTCGAATCGTGGCAACGAACCGTCGCCTCACTCGGCGCCGCCGTTGACTGCCATACCTCTGTTGCCAATAATGTCGGCTGCTGTATCCGCGACGGTGGCGGCCGTTCCAGCGGTAACTGCCACAGCTCCAGGTGCTGCTCCGTTGGCTGCACAGCCGTTACAGCAAATTCGCGATCCATCGGCTGTGGCTGCGGTGCCGAAGCAGAATAATGGAGCGGCTCCATTCAACTTTAGTGCTGAGCTTTTGGCGGTGATGCAAGATATGATAAGGAAGGAAGTGAGGAGTTATATGGCTGGATTAGAGCAGCAAAGTAACAATAATGGGATGTGTTTTCAGGCTGCTGATGGTGGCTTTAGGAACGCTTCCGTTAAGCGAATTGGGATTAGCAGGATCGATTCGTAA 1059 0.5732 MNTATSTTAVTRKDMDRIKGPWSPEEDDALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASMGPIDDPHFAQPLKRSVSAGAAVPVSTGLYMNPPTPGSPSGSDVSESSVPAASTSHVFRPVPRAGGVVPPVETTSSSYDPPTSLSLSLPGVDSNSEVSNRGNEPSPHSAPPLTAIPLLPIMSAAVSATVAAVPAVTATAPGAAPLAAQPLQQIRDPSAVAAVPKQNNGAAPFNFSAELLAVMQDMIRKEVRSYMAGLEQQSNNNGMCFQAADGGFRNASVKRIGISRIDS* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0602 352 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 9 318 - -
Ahy5g0602 352 CDD SANT 73 116 IPR001005 -
Ahy5g0602 352 MobiDBLite consensus disorder prediction 1 25 - -
Ahy5g0602 352 SMART sant 70 118 IPR001005 -
Ahy5g0602 352 SMART sant 18 67 IPR001005 -
Ahy5g0602 352 Pfam Myb-like DNA-binding domain 22 79 - -
Ahy5g0602 352 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Ahy5g0602 352 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Ahy5g0602 352 Gene3D - 18 70 - -
Ahy5g0602 352 MobiDBLite consensus disorder prediction 150 232 - -
Ahy5g0602 352 ProSiteProfiles Myb-like domain profile. 14 65 IPR001005 -
Ahy5g0602 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 69 IPR017930 -
Ahy5g0602 352 Gene3D - 72 133 - -
Ahy5g0602 352 MobiDBLite consensus disorder prediction 153 176 - -
Ahy5g0602 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 120 IPR017930 -
Ahy5g0602 352 MobiDBLite consensus disorder prediction 192 228 - -
Ahy5g0602 352 CDD SANT 21 63 IPR001005 -
Ahy5g0602 352 PANTHER MYB PROTEIN-RELATED 9 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0602 Ahy-Chr5 7682308 7684070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0602 11 351 MYB Transcription Factor Family AT4G37260 49.863 6.48e-103 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy5g0602 Myb_DNA-bind_6 1.50E-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1000 11 22159091 22160604 Ahy5g0602 5 7682308 7684070 PCT
Ahy1g1000 1 17414505 17416121 Ahy5g0602 5 7682308 7684070 PCT