Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2549 ATGTCGGAAGTTGCAAAGGACCCTGCGATCAAGCTCTTCGGGAAGACGATCCCGGTGCCGGAGATTCCTACCGGATCCGGCGACCTCACCGGAGCTCCGGCACTCTCGTCCGTTGATGACAGTGTTGATCAGAATAACACCTCTTCCACGAACTCTACCAGCAGCAGCGATGCACATGAGCTAGAAGAAATTGATAACAAGGATACTTTGGGAAATAAACCGGATGAAAAAAGGGAAGTGGTGCCCCTGCAATCATCAGAAATTGTCAATCCGGATACAGCATCTGCTGCAGGTGAAGAATCTGTTAGTCAGTCCACTGAGAAAGAAGCCATGGCCTTGAAAACTTCCAAGACTGAAGAAGAACAGTCTGAGACAAGTAATTCACAAGATAAGACCCTCAAAAAGCCAGACAAAATTCTGCCGTGCCCCCGCTGTAATAGCATGGACACCAAGTTCTGTTACTACAACAACTACAACGTCAACCAACCCCGCCACTTCTGCAAGAACTGTCAGAGATATTGGACTGCTGGCGGAACCATGAGGAACGTACCTGTAGGTGCCGGTCGCAGGAAGAACAAGAACACTGCTGTTCATTATCGTCAGATAACTGGCCCCGAAGGAGCAATGCAAAATAACAGGAAAGACTTGCCAAATGGGGTCCATCATCCTCCTTTGATGTGCAACGGCACGGTCCTTACATTTGGTTCTGATGCACCCTTGTGCGAATCAATGGCATCTGTTTTGAACCTTTCTGAAAAAACTGCACACAATTACATGAGGAATGGATTTGCTAAGCCTGAAGAGCTAAGAATTCGGGTTCCCTGTGCGAGTGAAGAAAAAGGGAAGGATCAATCCAATAAATCTTCGGTTAGCTCTGCAAAACTGATGGGAGGTACAACCAATAGTAATTCCCAAGAACAATCCATTCAGAATGGTCATAGCTTCACACCACAAATTCCCTACTTTCCCGGTCCCCCTTGGACTTTCCCTTGGAATCCGGCGCAGTGGAACTCTTCAGTACCACCACCTGCTTTTTGCCCACCGAGATTTGCCATGCCTTTCTATCCTTATTGGGGTGTCTCGGGTGCATGGAACATGCCGTGGCTAGCACAACCATCATCGCCAAATGCTGCAGCCACAAACTCTGGGCCTAACTCCCCAACCTTGGGTAAACATTCAAGAGAAGAAAACATGTTTAAATCAAATGAGCCGGGTGGTGAGAATGAGGACAAACAAAGCAAAGAGAATCACAAAGAAAAGTGCCTTTGGGTTCCAAAAACACTAAGAATTGATGATCCAGAAGAAGCAGCAAAAAGTTCTATATGGACTACACTCGGAATCAAACATGATAAGGATGACTCAGTTCTTGGGGAAGGACTCTTCAAACCATTCCCTTCAAAGTACCACGAAAAGAATCATCCGATGCAAGCCTCGCCTGTCTTGCAGGCCAATCCGGCAGCATTGTCTAGGTCGCTAAACTTTCACGAGACTTCATAA 1497 0.4689 MSEVAKDPAIKLFGKTIPVPEIPTGSGDLTGAPALSSVDDSVDQNNTSSTNSTSSSDAHELEEIDNKDTLGNKPDEKREVVPLQSSEIVNPDTASAAGEESVSQSTEKEAMALKTSKTEEEQSETSNSQDKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNTAVHYRQITGPEGAMQNNRKDLPNGVHHPPLMCNGTVLTFGSDAPLCESMASVLNLSEKTAHNYMRNGFAKPEELRIRVPCASEEKGKDQSNKSSVSSAKLMGGTTNSNSQEQSIQNGHSFTPQIPYFPGPPWTFPWNPAQWNSSVPPPAFCPPRFAMPFYPYWGVSGAWNMPWLAQPSSPNAAATNSGPNSPTLGKHSREENMFKSNEPGGENEDKQSKENHKEKCLWVPKTLRIDDPEEAAKSSIWTTLGIKHDKDDSVLGEGLFKPFPSKYHEKNHPMQASPVLQANPAALSRSLNFHETS* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2549 498 MobiDBLite consensus disorder prediction 1 136 - -
Ahy4g2549 498 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 497 - -
Ahy4g2549 498 PANTHER CYCLIC DOF FACTOR 2 1 497 IPR045174 GO:0003700|GO:0006355
Ahy4g2549 498 Pfam Dof domain, zinc finger 137 194 IPR003851 GO:0003677|GO:0006355
Ahy4g2549 498 MobiDBLite consensus disorder prediction 286 317 - -
Ahy4g2549 498 ProSitePatterns Zinc finger Dof-type signature. 142 178 IPR003851 GO:0003677|GO:0006355
Ahy4g2549 498 MobiDBLite consensus disorder prediction 374 420 - -
Ahy4g2549 498 MobiDBLite consensus disorder prediction 86 111 - -
Ahy4g2549 498 MobiDBLite consensus disorder prediction 112 136 - -
Ahy4g2549 498 MobiDBLite consensus disorder prediction 276 317 - -
Ahy4g2549 498 ProSiteProfiles Zinc finger Dof-type profile. 140 194 IPR003851 GO:0003677|GO:0006355
Ahy4g2549 498 MobiDBLite consensus disorder prediction 37 57 - -
Ahy4g2549 498 MobiDBLite consensus disorder prediction 58 82 - -
Ahy4g2549 498 MobiDBLite consensus disorder prediction 374 392 - -
Ahy4g2549 498 MobiDBLite consensus disorder prediction 393 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2549 Ahy-Chr4 123394363 123397838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2549 7 498 C2C2-Dof Transcription Factor Family AT5G39660 43.629 4.70e-114 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy4g2549 zf-Dof 3.80E-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2549 - - aprc:113862693 721.465