Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g4300 ATGGCTCCACTAGAAAAAACTGGAGAAGAAAGAGAAGGGATTAAACTGTTTGGCATAACGATCACGTTGCATGCAGCAGAAAGAAAAGAAGATGAGAAAAGCAGCAATGGTAGCGAAGAAGATGATGATCATGATCATGGAGAAGATCAAGAAGAGATGATGAAGAAACCAAACAAGATCATAGCATGTCCAAGATGCAAGAGCATGGAAACCAAGTTTTGTTACTTCAATAACTACAACGTTAATCAGCCTAGGCATTTCTGCAAGGCCTGCCACAGGTATTGGACTGCCGGAGGGGCCCTTCGCAACGTCCCGGTCGGTGCAGGCCGCCGAAAGGGTAAGCTGCCGTCCCCTGCCGCCGCCCGTCACGGTGGCGCCATCTGTGATTCATCATCCACTGTTCAGAAATTTGGATTAGATGATGAAGAGGGGTTGGTTTTGGACGAGTGGGATGTTGCCACCGTCATTCACGGTGGTTTCCGGCAGCTTTTTCATCAGTCGTCTAAACGGCGGAGGACGAGCTCTGAGGATGCTCAACCTTGTTAA 546 0.4872 MAPLEKTGEEREGIKLFGITITLHAAERKEDEKSSNGSEEDDDHDHGEDQEEMMKKPNKIIACPRCKSMETKFCYFNNYNVNQPRHFCKACHRYWTAGGALRNVPVGAGRRKGKLPSPAAARHGGAICDSSSTVQKFGLDDEEGLVLDEWDVATVIHGGFRQLFHQSSKRRRTSSEDAQPC* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g4300 181 Pfam Dof domain, zinc finger 59 114 IPR003851 GO:0003677|GO:0006355
Ahy3g4300 181 MobiDBLite consensus disorder prediction 25 55 - -
Ahy3g4300 181 ProSiteProfiles Zinc finger Dof-type profile. 61 115 IPR003851 GO:0003677|GO:0006355
Ahy3g4300 181 PANTHER CYCLIC DOF FACTOR 2 9 176 IPR045174 GO:0003700|GO:0006355
Ahy3g4300 181 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 9 176 - -
Ahy3g4300 181 MobiDBLite consensus disorder prediction 25 41 - -
Ahy3g4300 181 ProSitePatterns Zinc finger Dof-type signature. 63 99 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g4300 Ahy-Chr3 142993091 142993817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g4300 9 181 C2C2-Dof Transcription Factor Family AT2G34140 50.000 2.36e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy3g4300 zf-Dof 1.10E-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g4300 - - aip:107634834 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4552 13 145866975 145867951 Ahy3g4300 3 142993091 142993817 hybridization