Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g4085 ATGGATGATGATATGTTGAACATGACCAATTGGGGATACTATGAACCCTTCAAAGGAGGGCATCTTGGCCTGCAGCTCATGCCTGGTATGACAGATCGTGACACAAAACCATTTATGCCTGGTCGTGATCCAACTATGTTAGTTAATACAAATGGAACCTTTCACCCTCGAGACTGTGTAGTTTCCGAAGCACAAATGCCAATCAACTATGTGAGGGATAGTTGGATAAGCCAGCGAGATAGGTTTTTCAATATGCAGCCTACCAATCCCAATTATCCTGTTCTTCCGGAAACTTCAGCCGCCCCAACCCAAATTACACAGCCACCTGATACATCAAGAGATGAGAAGGCTGATATAGTTGAAGAAACAGTGCAAAAGGAAGGAGTCCAACCAAGGAAACGGCAGGGTAGGGTTGCCTCAACAACTCCAAAAGCGAAGAAACCAAGGAAGCCGAAGGATAACAGCAATGCTCCTGTCCAAAGATCGAAGCCCATGAAGACAATTGAGTTTGTAATAAATGGAATTGATATGGATATTTCCAGTTTACCCATTCCAGTTTGTTCATGTACCGGGACTCCGCAGCAGTGTTATCGCTGGGGATGTGGAGGATGGCAGTCTGCTTGTTGTACTACAAATGTGTCGACATATCCATTGCCAATGAGCATGAAACGACGTGGGGCAAGGATAGCTGGACGGAAAATGAGCCAGGGTGCTTTTAAGAAGGTATTAGAGAAACTAGCAGCCGAAGGCTATAATTTTGGTAACCCAATTGACCTGAGGAATCACTGGGCTAGACATGGCACCAACAAATTTGTCACTATCAGGTAG 828 0.4505 MDDDMLNMTNWGYYEPFKGGHLGLQLMPGMTDRDTKPFMPGRDPTMLVNTNGTFHPRDCVVSEAQMPINYVRDSWISQRDRFFNMQPTNPNYPVLPETSAAPTQITQPPDTSRDEKADIVEETVQKEGVQPRKRQGRVASTTPKAKKPRKPKDNSNAPVQRSKPMKTIEFVINGIDMDISSLPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSTYPLPMSMKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFGNPIDLRNHWARHGTNKFVTIR* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g4085 275 Pfam GAGA binding protein-like family 1 275 IPR010409 -
Ahy3g4085 275 PANTHER PROTEIN BASIC PENTACYSTEINE2-LIKE 1 275 - -
Ahy3g4085 275 MobiDBLite consensus disorder prediction 87 110 - -
Ahy3g4085 275 MobiDBLite consensus disorder prediction 87 165 - -
Ahy3g4085 275 SMART GAGA_bind_2 1 275 IPR010409 -
Ahy3g4085 275 MobiDBLite consensus disorder prediction 111 133 - -
Ahy3g4085 275 PANTHER - 1 275 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g4085 Ahy-Chr3 140333549 140335445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g4085 1 275 BBR or BPC Transcription factor family AT2G01930 56.811 5.24e-102 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Ahy3g4085 GAGA_bind 2.10E-101 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4361 13 143306496 143308604 Ahy3g4085 3 140333549 140335445 hybridization