Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3896 ATGGTGAACGTTCCGAAGACAAAGAAGACGTACTGCAAGAGCAAGGAGTGCAGGAAGCACACTCTTCACAAGGTTACCCAATACAAGAAGGGCAAGGATAGCATCGCCGCTCAGGGTAAGCGCCGTTATGACCGCAAGCAATCCGGTTATGGTGGCCAGACCAAGCCCGTCTTCCACAAAAAGGCCAAGACCACCAAGAAAATTGTGTTGAGGCTTCAATGCCAGGGCTGCAAACATGTCTCCCAGCATCCTATTAAGAGATGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGAAAAGGAACTTCCCTCTTCTAA 318 0.4937 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3896 105 SUPERFAMILY Zn-binding ribosomal proteins 2 94 IPR011332 GO:0006412
Ahy3g3896 105 Pfam Ribosomal protein L44 19 94 IPR000552 GO:0003735|GO:0005840|GO:0006412
Ahy3g3896 105 ProSitePatterns Ribosomal protein L44e signature. 63 74 IPR000552 GO:0003735|GO:0005840|GO:0006412
Ahy3g3896 105 Gene3D - 1 105 - -
Ahy3g3896 105 MobiDBLite consensus disorder prediction 28 56 - -
Ahy3g3896 105 PANTHER 60S RIBOSOMAL PROTEIN L44-LIKE 2 105 - -
Ahy3g3896 105 PANTHER 60S RIBOSOMAL PROTEIN L36A/L44 2 105 IPR000552 GO:0003735|GO:0005840|GO:0006412
Ahy3g3896 105 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3896 Ahy-Chr3 138340325 138341449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3896 1 105 Cytoplasmic Ribosomal Protein Gene Family AT3G23390 92.381 3.88e-68 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3896 K02929 - egr:104421613 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4172 13 141251060 141252196 Ahy3g3896 3 138340325 138341449 hybridization
Ahy3g3896 3 138340325 138341449 Ahy20g0841 20 10882462 10883684 PCT
Ahy3g3896 3 138340325 138341449 Ahy10g0569 10 5697753 5698973 PCT
Ahy20g0841 20 10882462 10883684 Ahy3g3896 3 138340325 138341449 PCT
Ahy10g0569 10 5697753 5698973 Ahy3g3896 3 138340325 138341449 PCT