Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3341 ATGATGCCACCTGGTGATACACCTTCGAAGGCTACTGCAACAACAAAAACATGCTCATCACCTAATACAAAAGATCATGAGAATTCCGACCAGCAAGGTGGAGGTGGTGGCCGGAAAACCACAAAGGCAGCAGCAGCAGAACAAGGACTAAAGTGCCCTCGATGTGACTCACCCAACACCAAATTCTGCTACTATAACAATTACAGCCTTACGCAGCCACGCCACTTCTGCAAGACTTGCCGCCGCTACTGGACAAAAGGCGGAGCCCTGCGCAACGTCCCCATAGGCGGTGGATGCCGCAAAAGCAAGAAAGGGAAGCCCTCGTCGTCCTCCTCCATCTCTTACTCAAGGGCATTTTCATGCGACTCCTCCAGGGACTCTGGTTCTTCCTCTGACCTCGCTGGCCTTAGGTACCTCCATGGGCTTTCTTCTCCTCCCATGGATTTTCAACTTGGAGGGTTAACTTTCCCTGTCCCTTCTAGGCTGCAACATCATCATCAACCTCCAATGGCTACTACAGCTGCTTTCTATAACAACCAGTTCTCTTCTTTTGGGGATGTTGTTCCGGGAGCTACTACTACTGCTTCTGCTTCTGCTTCTGCTTCTTCCGCCATTGATTATCCCTCGGGGAGTTCTTTGATTGGTCTGAACTATCCGTTTTGTTCTTCAGATGGAAGCGGTAGTAATGGTGCAATAATCCATGGCGGTATGAACAATAACTTTGAGGGTAGTAGTAGCCTTGCGTCTTCGATTGAGTCGTTGAGTTCCTTGAACCAAGACTTGCATTGGAAGCTTCAGCAGCAAAGGTTGGCAATGCTCTTTGTCGGAGACAACCACCACAAAGAAGATCACAACAACAACAGCAACCGCAACGGCAACGTTTCTTTTTCTCCCGTGGTTGTTGATCTTGATCATCATCATCATCATCATCAGCAGCAGCAGCAGCAGCAGAGACCCCAACCAATTTTATTTGAGAATCTTGAAATTTCAAAGGCAGGTGCAGGTGCTACTACTGTAGATGCAGATACTAGAGCCACAGAATGGTTCTTCGGGAATTCTCATGCTCCTACTCCAACGACGACTACCAGCAGCGGTTGCAATGGCCATGAAGATAGCTGGATGATGGGCAGCAGCGGTGTCCATGGTTGGCCTGATTTGCAACCGCACCCGCAGCAACAGTACAGTTCTTTGCCCTAG 1197 0.4921 MMPPGDTPSKATATTKTCSSPNTKDHENSDQQGGGGGRKTTKAAAAEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKKGKPSSSSSISYSRAFSCDSSRDSGSSSDLAGLRYLHGLSSPPMDFQLGGLTFPVPSRLQHHHQPPMATTAAFYNNQFSSFGDVVPGATTTASASASASSAIDYPSGSSLIGLNYPFCSSDGSGSNGAIIHGGMNNNFEGSSSLASSIESLSSLNQDLHWKLQQQRLAMLFVGDNHHKEDHNNNSNRNGNVSFSPVVVDLDHHHHHHQQQQQQQRPQPILFENLEISKAGAGATTVDADTRATEWFFGNSHAPTPTTTTSSGCNGHEDSWMMGSSGVHGWPDLQPHPQQQYSSLP* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3341 398 Pfam Dof domain, zinc finger 48 104 IPR003851 GO:0003677|GO:0006355
Ahy3g3341 398 MobiDBLite consensus disorder prediction 1 42 - -
Ahy3g3341 398 MobiDBLite consensus disorder prediction 8 36 - -
Ahy3g3341 398 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
Ahy3g3341 398 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 27 373 IPR045174 GO:0003700|GO:0006355
Ahy3g3341 398 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 27 373 - -
Ahy3g3341 398 MobiDBLite consensus disorder prediction 350 398 - -
Ahy3g3341 398 MobiDBLite consensus disorder prediction 104 127 - -
Ahy3g3341 398 MobiDBLite consensus disorder prediction 350 371 - -
Ahy3g3341 398 MobiDBLite consensus disorder prediction 95 127 - -
Ahy3g3341 398 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3341 Ahy-Chr3 131913013 131914912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3341 40 398 C2C2-Dof Transcription Factor Family AT5G65590 38.567 4.05e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy3g3341 zf-Dof 2.30E-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3341 - - ahf:112791714 672.544