Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3089 ATGTTGGTTAATATCATGCCTCCATCAACGACTAACGAATGGACACAGACTCAAATCATAGATGATCAAAATCACAACACCAAAGCTGAAGCTCCACCACCATCATCGTCATCATCAGCTGCTAGGGTTATGGAAAAACAAGGTCAAGAACATGTTCAGCAGCAGCAGCAGCAACAAGCTCTCAAGTGCCCTCGCTGCGATTCATCCAACACCAAATTCTGCTACTACAACAACTACAGCTTATCGCAGCCTAGACACTTCTGCAAAGCCTGCAAGCGATACTGGACAAGAGGTGGAACCCTCCGCAACGTCCCCGTCGGCGGTGGCTGCAGAAAAAACACCAAGCGTCTCAAGCGCCAATCATCTTCTTCCATCGATGCCACTCCTTCTCCTTCTTCTTCTTCCACTCATCCTCCGGCTTCTAATATCAACCCTTTGTTTTATGGGGTACCTAGTAGTAATAATAATAACAACAACAATAACTCTTGTGATTTGTTGAACCTACCTTCTTTCCCTGGGTTCAGAGTGAGTTCTGGGTATGATAATGATGTTCAGCCTCACCTAAGTGGGTTAGGTTTTTCATCAGGGATCATGTCCAATATGGAAGCTACTGGATTTGGTTCAAATGAGAGTAACTCATTTCTTTCGGCCTACAATTCCATCTTCGGTTCGTGTTCTTCATCAGCTTCTACTACCTTGCTGAGTTCCACTCTACTGCAGCATAAATTCATGAATGGTGGTGGATTCCAAGGGCTAGCTACTCCTGAGGTTGAAGAGATGCAAATGAGAGAGAGGCGTGAGGGAGAAAGAGGAGGAGTCATGGGTTGTTCTTCTTTGAAAGAAGTGAAAGGTGAATTATTGGGAGAAGAAAGAGGGAGAGAGAGGTTGGAGTGGCAGAATCAGATGATGGAACATACCATGGGCTTTTCTGATCCCTCTTCTTCGCTTTATTGGAGCACATCATCATCACCCATGGCTGCTTCTTCTTGGAATGATCAACCCAATATTGGTCCTTCTGTCACTTCACTCATCTAG 1035 0.4512 MLVNIMPPSTTNEWTQTQIIDDQNHNTKAEAPPPSSSSSAARVMEKQGQEHVQQQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNTKRLKRQSSSSIDATPSPSSSSTHPPASNINPLFYGVPSSNNNNNNNNSCDLLNLPSFPGFRVSSGYDNDVQPHLSGLGFSSGIMSNMEATGFGSNESNSFLSAYNSIFGSCSSSASTTLLSSTLLQHKFMNGGGFQGLATPEVEEMQMRERREGERGGVMGCSSLKEVKGELLGEERGRERLEWQNQMMEHTMGFSDPSSSLYWSTSSSPMAASSWNDQPNIGPSVTSLI* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3089 344 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 8 327 - -
Ahy3g3089 344 MobiDBLite consensus disorder prediction 324 344 - -
Ahy3g3089 344 MobiDBLite consensus disorder prediction 105 151 - -
Ahy3g3089 344 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 8 327 IPR045174 GO:0003700|GO:0006355
Ahy3g3089 344 ProSiteProfiles Zinc finger Dof-type profile. 61 115 IPR003851 GO:0003677|GO:0006355
Ahy3g3089 344 MobiDBLite consensus disorder prediction 120 151 - -
Ahy3g3089 344 MobiDBLite consensus disorder prediction 25 56 - -
Ahy3g3089 344 Pfam Dof domain, zinc finger 59 115 IPR003851 GO:0003677|GO:0006355
Ahy3g3089 344 ProSitePatterns Zinc finger Dof-type signature. 63 99 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3089 Ahy-Chr3 128248989 128251818 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3089 56 206 C2C2-Dof Transcription Factor Family AT5G65590 47.619 5.21e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy3g3089 zf-Dof 7.60E-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3089 - - aip:107631218 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3356 13 130667215 130670397 Ahy3g3089 3 128248989 128251818 hybridization
Ahy3g3089 3 128248989 128251818 Ahy20g0433 20 4399252 4400835 PCT
Ahy3g3089 3 128248989 128251818 Ahy10g0254 10 2300967 2302266 PCT
Ahy20g0433 20 4399252 4400835 Ahy3g3089 3 128248989 128251818 PCT
Ahy10g0254 10 2300967 2302266 Ahy3g3089 3 128248989 128251818 PCT