Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3088 ATGGAGAAAGAAGGAGAGGTCAGTAAAGAGCAAGTTGCTGGGCCTCTGCCTCCACCTCCGCCTCTGCCTCCGCCTCGGCCGCCGCCACAGCATAAATGCCCACGGTGTGATTCAGACAACACCAAGTTCTGCTATTACAATAACTACAGCCTGTCACAGCCTCGATACTTGTGCAAAGCATGTAAGAGGTACTGGACACAAGGTGGAACCCTCAGGAATATTCCTCTTGGTGCTTCCAAGAACAAGATCAAGAACAAGCCCAACAAGCGTACCTTCAACACTGCTACTACTACTTCTTCTTCCTCTCATCATCATGCTGCTGGTTCTACTGCATCATCAGCAGCAGCAGCAGCAGCAACATCAGGGAGCAGCATGGCAGAATATACAACTGCTGCTGCTTCTCACCTTCATCATCAATGGCCCTCTCATGCCAACTACTCTTTCTGGAGTACTACTGTCTGCACCACTTCTTCCATAAGCGCTAATAATAACAACTCTTCTCAGTCACAGACCAATATCATGCCAAGAACAGCAGCTTCTTCCTCTCCTTCTTTCATCACACCAAATCAATGGCCACATCTCAAATGGAACCACCCTATGCCTCCTCCATGA 612 0.4869 MEKEGEVSKEQVAGPLPPPPPLPPPRPPPQHKCPRCDSDNTKFCYYNNYSLSQPRYLCKACKRYWTQGGTLRNIPLGASKNKIKNKPNKRTFNTATTTSSSSHHHAAGSTASSAAAAAATSGSSMAEYTTAAASHLHHQWPSHANYSFWSTTVCTTSSISANNNNSSQSQTNIMPRTAASSSPSFITPNQWPHLKWNHPMPPP* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3088 203 Pfam Dof domain, zinc finger 30 85 IPR003851 GO:0003677|GO:0006355
Ahy3g3088 203 MobiDBLite consensus disorder prediction 13 31 - -
Ahy3g3088 203 MobiDBLite consensus disorder prediction 72 114 - -
Ahy3g3088 203 MobiDBLite consensus disorder prediction 88 114 - -
Ahy3g3088 203 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
Ahy3g3088 203 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 171 IPR045174 GO:0003700|GO:0006355
Ahy3g3088 203 MobiDBLite consensus disorder prediction 162 203 - -
Ahy3g3088 203 MobiDBLite consensus disorder prediction 1 33 - -
Ahy3g3088 203 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 171 - -
Ahy3g3088 203 MobiDBLite consensus disorder prediction 162 191 - -
Ahy3g3088 203 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3088 Ahy-Chr3 128227603 128229091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3088 26 144 C2C2-Dof Transcription Factor Family AT4G21050 42.500 1.35e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy3g3088 zf-Dof 1.60E-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3088 - - aip:107634681 325.094