Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3043 ATGGGTTTGAGTTCCAAGCAGGTTTCAAGGAGTAGTAGTGGACTTGATTGGAACCAAGCCTTATTGGAATCACAGAAATTGGAGCTTCCAATTCCAAAGCCTCATCATATCATGAAGAAACAACAACAGAATCAATCATCATCATCATCATCAGAGCCAATGAAGTGTCCAAGATGTGAATCTACCAACACAAAGTTCTGTTACTACAACAATTACAACAAGTCTCAGCCTCGCTATTTATGTAGAACTTGCAAGCGGCACTGGACCAAAGGTGGAACTTTGCGCAATGTTCCAGTTGGTGGTGGAAGAAAGAACAAAAGGGTAAAAAAATCAACCGCCACTGCAACCGCCACAGCCACCGCCACCACCTCTACTTGCACCACAAGCATCAGAATTCAAGCTCCTTCTCTTGCAATGGATGATCACAAAAACATAGCTTCTCCTTCTCCTTCTTCTTCTTCTTCCCTCTATCAAGGTCTGATTCGTCCACCACCTTTCCTACTACATCAGAATCTGATGAATAATATCATTACCAGAGGCATAACATCAGAAAGTAAAGGTTATGGTATTGGTATTGGTATTGGTAATAATAACAATAATACCAATGGCATCTTTCTTGGTTCATCAGCTTTGTCTCTTCCTCAGAATCAAGGCTTGCTTTTCCCCTTCTCAACTGCATCAAGCTCTAATTTTGACACAAACCCATGTTTAGTTTCAGTTTCAACCTCTTTGCAATCCGCCAATGTTTATAATAACTGTGGTGGTGAAGAGTTTAAAGCAATAGAGGAACCAAGCATGAACAGCATAATGGCTACCACTACTTCTACACAACCATGGGAGATACCAGCAGCAACAATGGAAATGTCAAACTATTGGGGTTGGGAGGACATTGATTCTTTGGTCTCTACTGATCCGAACAATAATCATCCTTGGGATGATTCTGATGATATCAAACCCTGA 960 0.4115 MGLSSKQVSRSSSGLDWNQALLESQKLELPIPKPHHIMKKQQQNQSSSSSSEPMKCPRCESTNTKFCYYNNYNKSQPRYLCRTCKRHWTKGGTLRNVPVGGGRKNKRVKKSTATATATATATTSTCTTSIRIQAPSLAMDDHKNIASPSPSSSSSLYQGLIRPPPFLLHQNLMNNIITRGITSESKGYGIGIGIGNNNNNTNGIFLGSSALSLPQNQGLLFPFSTASSSNFDTNPCLVSVSTSLQSANVYNNCGGEEFKAIEEPSMNSIMATTTSTQPWEIPAATMEMSNYWGWEDIDSLVSTDPNNNHPWDDSDDIKP* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3043 319 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 196 IPR045174 GO:0003700|GO:0006355
Ahy3g3043 319 ProSiteProfiles Zinc finger Dof-type profile. 54 108 IPR003851 GO:0003677|GO:0006355
Ahy3g3043 319 MobiDBLite consensus disorder prediction 28 55 - -
Ahy3g3043 319 MobiDBLite consensus disorder prediction 38 55 - -
Ahy3g3043 319 ProSitePatterns Zinc finger Dof-type signature. 56 92 IPR003851 GO:0003677|GO:0006355
Ahy3g3043 319 Pfam Dof domain, zinc finger 53 106 IPR003851 GO:0003677|GO:0006355
Ahy3g3043 319 MobiDBLite consensus disorder prediction 95 116 - -
Ahy3g3043 319 PANTHER OS06G0284500 PROTEIN 40 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3043 Ahy-Chr3 127504861 127506851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3043 54 118 C2C2-Dof Transcription Factor Family AT5G60200 68.182 3.01e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy3g3043 zf-Dof 7.60E-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3043 - - gmx:100791855 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3310 13 130076229 130078155 Ahy3g3043 3 127504861 127506851 hybridization
Ahy3g3043 3 127504861 127506851 Ahy20g0485 20 4934903 4936681 PCT
Ahy3g3043 3 127504861 127506851 Ahy10g0302 10 2721840 2723611 PCT
Ahy20g0485 20 4934903 4936681 Ahy3g3043 3 127504861 127506851 PCT
Ahy10g0302 10 2721840 2723611 Ahy3g3043 3 127504861 127506851 PCT