Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1801 ATGATGAGAAACAATGTGCAGCAGCAGCAGCAGTTCAAAGATTCAGCTCTTAAGATGATCTCATTGTGCTCCCTAATTATTGTAGGTGTAGTTGAAACAAAATCAACAATAGAACCATGCAACTCCTCCCAGGCATGCCCCTCACTTCTCTCATACCTCTTGCCATGGGACTCAATGCTATCCGAAATAGCAACACGCTTCAACGTGAACGTCTCAGATATCATGGCCGCAAACTCTGCCTTCCCAATAACAGCATCGTGCGGCAACGAAATCGTGAGAGCAGGATCAACGGTGAAGATACCAGCCACGTGTCAGTGCGTGGATGGAATCAGAAGGTCGGTGTCAGCAGTGTACAGGGTGAAAGCATCGGACACACTGGAATCGATATCAGAGGGTTATGGAGGGCTTGTTACTGCAGATCAAATTAGGAGTTTCAACAAAGGCGTGCCTTTGGTGGATGGAGATGTGGTAGTTATACCGTTGCCGTGCAGTTGCATGAAGAACCAGAATAATGGGGAAAGTGCGGTTTATATGTCCTATGTGGTTCAGAAAGGGGAGACACTGGGAAGCGTGGCGGCTTATTTTGGTACAACTGTTTCTGATTTGGAATTTGTTAACGGTCTTGGACAACCTACCGTTCTACCTGGCGATATTCTATCGATTCCTATTCCAGCATGTTCATCAGCTACTCTGAATTGGTACAATGAGAGTTTGATAGTCCCAAATGGCTCATATGCTTTAACTGCCACCAACTGTATTAAATGCACTTGTGCTCCACAGGGTCTCAAGATGCAATGTTTTCCTTCTGGAATGGATGTACCTTGCTATAATTTACGTTGCAAGGGATCCAATCTTGCTATTGGGGATGAACATCTGGAATATTCCAATGCTGGATGCAATGTCACCCAATGTGTGTACCGTGGCCATAGGGGTGGAAAAATTCTGAGTAGTCTGATAAACTCTTCTTATCTGCAATGTCCGGATAATAAAAGCTCTAGTGGAGCAACATGTTGGCAACCCTCAGCACCATATTTGGCAGACCCATTTGTTTTGTCTCCAGGCCCAAGCCCAAGCCTATTCCCCTTGCCTGTTTCTGAGGCTGCTCTAATGACTCATGCCTATAACTATGACTATGACCATGAGAGAAGGCTCCATCTGTTCTCACTCATCTGTCGTATGCTACACTTGTTATTCCCAATGCTTCTACTTTGTTTTTTAATCTGA 1224 0.4502 MMRNNVQQQQQFKDSALKMISLCSLIIVGVVETKSTIEPCNSSQACPSLLSYLLPWDSMLSEIATRFNVNVSDIMAANSAFPITASCGNEIVRAGSTVKIPATCQCVDGIRRSVSAVYRVKASDTLESISEGYGGLVTADQIRSFNKGVPLVDGDVVVIPLPCSCMKNQNNGESAVYMSYVVQKGETLGSVAAYFGTTVSDLEFVNGLGQPTVLPGDILSIPIPACSSATLNWYNESLIVPNGSYALTATNCIKCTCAPQGLKMQCFPSGMDVPCYNLRCKGSNLAIGDEHLEYSNAGCNVTQCVYRGHRGGKILSSLINSSYLQCPDNKSSSGATCWQPSAPYLADPFVLSPGPSPSLFPLPVSEAALMTHAYNYDYDHERRLHLFSLICRMLHLLFPMLLLCFLI* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1801 407 ProSiteProfiles LysM domain profile. 178 221 IPR018392 -
Ahy3g1801 407 Pfam LysM domain 180 222 IPR018392 -
Ahy3g1801 407 Pfam LysM domain 118 148 IPR018392 -
Ahy3g1801 407 Pfam LysM domain 60 101 IPR018392 -
Ahy3g1801 407 CDD LysM 55 100 IPR018392 -
Ahy3g1801 407 CDD LysM 179 221 IPR018392 -
Ahy3g1801 407 SUPERFAMILY LysM domain 178 223 IPR036779 -
Ahy3g1801 407 SMART LysM_2 179 222 IPR018392 -
Ahy3g1801 407 SMART LysM_2 117 160 IPR018392 -
Ahy3g1801 407 SMART LysM_2 60 101 IPR018392 -
Ahy3g1801 407 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 1 16 402 - -
Ahy3g1801 407 Gene3D LysM domain 163 232 IPR036779 -
Ahy3g1801 407 CDD LysM 117 159 IPR018392 -
Ahy3g1801 407 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 16 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1801 Ahy-Chr3 36433958 36435880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1801 34 359 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 41.840 1.67e-74 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1801 - - gmx:100819382 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2096 13 38656848 38658916 Ahy3g1801 3 36433958 36435880 hybridization