Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0196 ATGGATCCTTCTAGTGGACAACAGAACCACCAGCAAATGGCAAACAATAATAACAATCAGTCACTAGAAAGCATGATGTTGGGTTGCACAAAACAAGAACAACAACAAGAGAAGAAGCCAAGGCCACAACCAGAACAAGCATTGAAATGTCCAAGATGTGATTCAACAAACACAAAGTTCTGTTACTACAACAACTACAGTCTCTCACAGCCAAGGTACTTCTGCAAATCTTGCAGAAGGTACTGGACAAAAGGAGGAACATTGAGGAATGTTCCAGTAGGTGGAGGCTGCAGAAAGAACAAAAGATCATGTTCTTCTTCATCAAAGAGAGCTCAAGATCAATTACCCTTTAACCCAGATCATAACCCTCTCATGAATTCTCTCCCTCCATTGTCATATGACTCTGAATTCACACTTGCATTGGCTAGGCTCCAAAAACAAACAGGTGGTGTGCATCTTGGTCTTGATGACCACCATGATCTCTCAATGTTGGTGAACCACACTAACACTAACACCAACACCACAACACAACAACAACAACAACAACAACAACAAGGATTCTTGGATGCACTTAGAAGCAATGGATTCAACAGCAACACCATGCATAGTGATTTGTACTATGGTGGAAATGGGGACATGGGTGAGGTTTATAATGAGATTATGCTTCCTTATGAGCAAGAAATGAGTGTTGAAACAACTCAAGCAGTTACTGTCACAACCACAAAGCAAGAACTCTGCAATGTTAGTTATAATTGCAATAATACTAATAATAATAATAAGGTTTTGTGGGGTTTTCCATGGCAGATCAATGGAGAAACAAACATGCTTGGAGATATTGATTTATCAAGAGCAAGTTGGAATGGTAATGGTCCTCTCACTACTCCATTATCTTGGCATGGACTTCTCAATAGTCCCCTAATGTAG 924 0.4004 MDPSSGQQNHQQMANNNNNQSLESMMLGCTKQEQQQEKKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSCSSSSKRAQDQLPFNPDHNPLMNSLPPLSYDSEFTLALARLQKQTGGVHLGLDDHHDLSMLVNHTNTNTNTTTQQQQQQQQQGFLDALRSNGFNSNTMHSDLYYGGNGDMGEVYNEIMLPYEQEMSVETTQAVTVTTTKQELCNVSYNCNNTNNNNKVLWGFPWQINGETNMLGDIDLSRASWNGNGPLTTPLSWHGLLNSPLM* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0196 307 Pfam Dof domain, zinc finger 46 102 IPR003851 GO:0003677|GO:0006355
Ahy3g0196 307 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
Ahy3g0196 307 MobiDBLite consensus disorder prediction 94 120 - -
Ahy3g0196 307 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
Ahy3g0196 307 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 306 IPR045174 GO:0003700|GO:0006355
Ahy3g0196 307 MobiDBLite consensus disorder prediction 1 49 - -
Ahy3g0196 307 MobiDBLite consensus disorder prediction 1 33 - -
Ahy3g0196 307 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 15 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0196 Ahy-Chr3 2164737 2166271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0196 46 307 C2C2-Dof Transcription Factor Family AT2G28510 42.857 1.25e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy3g0196 zf-Dof 6.40E-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0196 - - gmx:100799737 306.99