Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g2419 ATGCAAAGAAAAGATGGAATCATGAAGAAAATTGCAACATTTTCAAAGTTATGTAAAGTTGAAGCTTGTCTAATTGTTTATGGAGATGATTCTTCTCAACCAATGACTTGGCCACAAGAACATTCAAAGGTGCAATCCATAATTGAAAAGTACGAGGTTCAAAAGAACAATGAGACACACCCCATAATCTTTGATGAAGAATTCATGATTGAGGCTGAGATTTCTAAATTGAGAAAGAAGGTACTCAAATTCAAGTATCCTACCATGGATCCAATTTTTACCACCTTAGATGGGAACCAATTGATGGAGTTCATTGCTTTGGTGAACACTAAAATTGAAACTTGTAAGAAAAGAATTGACATGTTGAAGGAGAGTAATCAAGATAATGGTAGCAACTTCAATGTTGACCAAAGTCAAAGTCAACTCAATTTCGTGAACAACATTCCTAATCATGATTATGCTCTTCATCATGATAATTTGGTATATCAAACTCAAAACCCTAAGTTTGATCCAAATGTTACTTATTTTGTGGCAAACAACAATGGGGTGATTATGGATTCTACTAGCCAAGTTAATGTGTCTCTAAATTGTTCTACTACAAATCAAGTTGCGGTTATGGATTCTAAAGAAAAGAGTGTTATTGTGGATTCTACAAATCAAATCAGTGAAAATGGTGGTCTTATTAATTGGAATGATTTTGTTGAGGTTGAGAATTGGATTGATCAACTTCAATATGAGACTGATTTAAAAGACATTCTTTCTCATCAATCTCAGAATGTGTCACAATCTTCACAAATCTTGCCACCAATAACAATGAATGGATTTTTGGCTGATGAGAAGAACAATAACCACCAATTCCAGTCATTCAACATGTAA 876 0.3356 MQRKDGIMKKIATFSKLCKVEACLIVYGDDSSQPMTWPQEHSKVQSIIEKYEVQKNNETHPIIFDEEFMIEAEISKLRKKVLKFKYPTMDPIFTTLDGNQLMEFIALVNTKIETCKKRIDMLKESNQDNGSNFNVDQSQSQLNFVNNIPNHDYALHHDNLVYQTQNPKFDPNVTYFVANNNGVIMDSTSQVNVSLNCSTTNQVAVMDSKEKSVIVDSTNQISENGGLINWNDFVEVENWIDQLQYETDLKDILSHQSQNVSQSSQILPPITMNGFLADEKNNNHQFQSFNM* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g2419 291 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 36 IPR002100 GO:0003677|GO:0046983
Ahy2g2419 291 Gene3D - 1 69 IPR036879 GO:0003677|GO:0046983
Ahy2g2419 291 SUPERFAMILY SRF-like 2 59 IPR036879 GO:0003677|GO:0046983
Ahy2g2419 291 PANTHER MADS BOX PROTEIN 1 250 - -
Ahy2g2419 291 PANTHER PROTEIN, PUTATIVE-RELATED 1 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g2419 Ahy-Chr2 100282965 100284098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g2419 2 118 Type I MADS-box Gene Family AT5G55690 30.894 3.88e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy2g2419 SRF-TF 2.20E-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g2419 - - adu:107476111 551.206