Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3159 ATGGGTTTGTCTGCAGAATCACAGTTTCATGTTTTGGCTGTTGATGATAGTCTCATTGACAGAATGTTGATTGAAAGACTTCTCAAAACTTCATCATTTCATGTTACTGCAGTGGACTCAGGAAGTAAGGCTTTAAAATTTCTTGGATTGGTTGAAGAAGAGCAGAGAAATGAAGAGCCTTCCTTTGTTGCTCAAAAAACTCATAATCAGGATGTAGATGTGAACCTGATCATAACAGATTATTGTATGCCAGAAATGACAGGCTATGATCTTCTTAGAAAGATCAAGGAATCAAAATCTCTTAAAGATATACCAGTTGTGATTATGTCCTCAGAGAATGTTCCATCAAGGATCAATAGATGCTTAGAAGAAGGAGCTGAAGAATTCTTTCTGAAACCAGTTCAACAATCTGATGTAAATAAGCTGAGGCCCCATTTATTGAAATCAAAGGTTAAGGAAGTGGGAGAGGAAGACCAACTCATCAACCTCAATAGAAAGGACATAAATGAAATTTTAGCCTAA 522 0.364 MGLSAESQFHVLAVDDSLIDRMLIERLLKTSSFHVTAVDSGSKALKFLGLVEEEQRNEEPSFVAQKTHNQDVDVNLIITDYCMPEMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQQSDVNKLRPHLLKSKVKEVGEEDQLINLNRKDINEILA* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3159 173 SUPERFAMILY CheY-like 8 142 IPR011006 -
Ahy20g3159 173 Gene3D - 4 156 - -
Ahy20g3159 173 SMART REC_2 9 143 IPR001789 GO:0000160
Ahy20g3159 173 ProSiteProfiles Response regulatory domain profile. 10 147 IPR001789 GO:0000160
Ahy20g3159 173 CDD REC_typeA_ARR 11 142 - -
Ahy20g3159 173 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 157 IPR045279 GO:0009736
Ahy20g3159 173 Pfam Response regulator receiver domain 11 139 IPR001789 GO:0000160
Ahy20g3159 173 PANTHER RESPONSE REGULATOR ARR8, PUTATIVE-RELATED 3 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3159 Ahy-Chr20 142251501 142253450 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ahy20g3159 Response_reg 1.70E-19 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g3159 20 142251501 142253450 Ahy10g2597 10 115470422 115477210 hybridization
Ahy20g3159 20 142251501 142253450 Ahy18g2140 18 115258603 115264506 PCT
Ahy20g3159 20 142251501 142253450 Ahy8g2060 8 41194701 41199943 PCT