Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3148 ATGAAGCTCTCAATTTTACTCACCATTCTCCTCCTACTAGTAGTCCAATCTGAACAACATAGTTCAACACTCCAAGTGTTCCATGTGAAACCACCAAAGCCACTCTCATGGCAAGACACTGTGCTCCAAATGCAAGCCAAAGATGAAGGCAGACTTCAATACCTAACTAGTCTTGTGGCAGGCAGGTCTGTTGTCCCAATTGCCTCAGGCAGGCAGATCATTCAGAGCCCTACTTACATTGTCAGGGCTAAAATTGGAAATCCACCTCAGACATTGCTTTTGGCTATGGATACTAGCAATGATGTTGCTTGGATTCCTTGCACTTCTTGTGATGGATGTTCTTCCACTTTGTTTGCTCCTCTTGGATCTACCTCATTTAGAAATGTTACTTGTGGCTCTCCTCAGTGCTATCAGGTACCCAATCCCAGTTGCAGTGGAAGCGCGTGCTCTTTCAACTTAACGTATGGAAGTTCATCTATTGCAGCTAACTTAGCCCAAGACACAATTACCCTTGCCACTGACCCAATTCCAAGCTACACTTTCGGTTGTGTTTCCAAGACTACTGGGCCTTCAACCCCACCACAGGGATTATTGGGCCTGGGCCGTGGCCCATTATCACTTTTGTCACAAACCCAAAACCTTTACCAGTCTACATTCTCTTACTGTTTACCAAGCTTTAAGTCCCTTAACTTTTCTGGGTCATTGAGACTTGGGCCTGTTGCTCAGCCCATTAGGATCAAGTTCACTCCTCTTCTCAAAAATCCAAGAAGATCATCACTCTACTATGTTAATTTGGTTGCTATTAGGGTTGGCCGGAGAGTTGTTGATATTCCTCCGGCGGCTTTGGCGTTCAACCCGACCACCGGAGCCGGCACCATCTTTGATTCTGGTACGGTATTCACCCGGCTAGTTTCGCCGGCCTACGTGGCCGTGCGAGATGAATTCCGGAGAAGAGTTGGAGCGAACCTGACCGTGACAAGTTTAGGAGGATTCGACACATGTTACACGGTCCCAATAGTTGCACCCACAATAACGTTCATGTTTTCGGGCATGAACGTGACATTGCCACAGGACAATATTCTGATACATAGCACCGCCGGAAGCACGACATGCTTGGCCATGGCGGCGGCACCGGATAACGTGAACTCGGTGCTGAATGTGATAGCCAACATGCAACAACAAAACCACCGTGTGCTCTTTGACATTCCCAACTCAAGGCTTGGTGTTGCTCGTGAGCTTTGCACCAAATAG 1251 0.4756 MKLSILLTILLLLVVQSEQHSSTLQVFHVKPPKPLSWQDTVLQMQAKDEGRLQYLTSLVAGRSVVPIASGRQIIQSPTYIVRAKIGNPPQTLLLAMDTSNDVAWIPCTSCDGCSSTLFAPLGSTSFRNVTCGSPQCYQVPNPSCSGSACSFNLTYGSSSIAANLAQDTITLATDPIPSYTFGCVSKTTGPSTPPQGLLGLGRGPLSLLSQTQNLYQSTFSYCLPSFKSLNFSGSLRLGPVAQPIRIKFTPLLKNPRRSSLYYVNLVAIRVGRRVVDIPPAALAFNPTTGAGTIFDSGTVFTRLVSPAYVAVRDEFRRRVGANLTVTSLGGFDTCYTVPIVAPTITFMFSGMNVTLPQDNILIHSTAGSTTCLAMAAAPDNVNSVLNVIANMQQQNHRVLFDIPNSRLGVARELCTK* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3148 416 Pfam Xylanase inhibitor N-terminal 79 238 IPR032861 -
Ahy20g3148 416 Pfam Xylanase inhibitor C-terminal 261 408 IPR032799 -
Ahy20g3148 416 PANTHER ASPARTYL PROTEASES 12 415 IPR001461 GO:0004190|GO:0006508
Ahy20g3148 416 ProSiteProfiles Peptidase family A1 domain profile. 79 410 IPR033121 -
Ahy20g3148 416 Gene3D Acid Proteases 41 238 IPR021109 -
Ahy20g3148 416 PANTHER ASPARTYL PROTEASE AED3-LIKE 12 415 - -
Ahy20g3148 416 SUPERFAMILY Acid proteases 77 414 IPR021109 -
Ahy20g3148 416 Gene3D Acid Proteases 241 416 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3148 Ahy-Chr20 142154465 142159404 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g3148 20 142154465 142159404 Ahy20g3148 20 142154465 142159404 ECH
Ahy20g3148 20 142154465 142159404 Ahy10g2587 10 115347644 115352845 hybridization