Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3139 ATGCCAGAGGCAAGCAGAGTTGATTCTTTTTGTTTGTCCGACTTTGATCAATCAATTGGAAATCACTTGGAGAATGCTGTCGAATTGAATGGAAATCCTGTAAATAGGTCGCTGAAAGTAAGTAGCCAGACAATTTCTCCTGGTCCTGTTCACCTTGGCACTTCTGATAGGTTGCCAATTTCAGTTGATAGAAGCTCATTTATGTACCTAGAAGACCGACTGAGCTTGCTGGCACAAAAGGTACAATCAACAAATCACATTATAATACCAAGTGGTGATACAGAAAACCAGGAAGAGTCTGCCATGGCTGATGCCAGTCCTAGAACTGATATTTCTACAGATGCCGATACCGATGATAAGAATCAGCGGTTTGATGGAAGTCAATCCCTTGCTGCTGTGGCTTCAGACTCAAGTGACAGATCAAAGGATAAAACAGATCAGAAGACTCTCCGCAGGCTTGCTCAGAATCGTGAGGCTGCAAGGAAAAGCCGATTGCGAAAGAAAGCTTATGTTCAACAATTGGAAAGTAGTCGTTTGAAGTTGACGCAATTGGAACAAGAGCTTCAGCGAGCCAGGCAGCAGGGAATCTTCATATCAAGTTCAGGTGATCAAGCACATTCAATGAGCGGCAATGGGGCCATGCAATTCGATGTCGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTTAGAGCTGCTGTAAATTCTCATGCAAGTGATACAGAACTTCGAATGATTATTGATGGTATATTGGCGCATTATGATGAGATATTTCGGCTGAAGGGCGTTGCAGCTAAGGCTGATGTCTTCCACCTGTTGTCTGGCATGTGGAAAACCCCAGCTGAGAGGTGTTTTTTGTGGCTCGGTGGCTTTCGGTCATCTGAACTCCTTAAGCTCCTGGTAAATCAGTTGGAGCCTCTCACTGAGCAGCAGTTGGTAGGTATTACCAACTTACAACAGTCTTCTCAACAGGCAGAAGATGCATTGTCTCAGGGCATGGAAGCACTGCAACAATCTCTTGCAGAGACTTTGTCCTCTGGATCACTTGGCTCATCCGGTTCATCAGGGAATGTCGCAAATTACATGGGTCAAATGGCCATGGCCATGGGTAAGCTAGGGACACTGGAGGGGTTTATTCGGCAGGCTGACAATTTGCGCCAGCAGACATTGCAACAAATGCACCGCATATTGACTACTCGCCAATCGGCTCGTGCTCTCCTTGCAATACATGACTATTTTTCAAGGCTGCGCGCTCTTAGTTCCCTCTGGCTCGCCCGCCCAAGAGACTAA 1302 0.4601 MPEASRVDSFCLSDFDQSIGNHLENAVELNGNPVNRSLKVSSQTISPGPVHLGTSDRLPISVDRSSFMYLEDRLSLLAQKVQSTNHIIIPSGDTENQEESAMADASPRTDISTDADTDDKNQRFDGSQSLAAVASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMQFDVEYARWLEEQNRQINELRAAVNSHASDTELRMIIDGILAHYDEIFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3139 433 SUPERFAMILY Leucine zipper domain 148 191 IPR046347 GO:0003700|GO:0006355
Ahy20g3139 433 ProSiteProfiles DOG1 domain profile. 213 430 IPR025422 GO:0006351|GO:0043565
Ahy20g3139 433 SMART brlzneu 144 207 IPR004827 GO:0003700|GO:0006355
Ahy20g3139 433 MobiDBLite consensus disorder prediction 88 107 - -
Ahy20g3139 433 Coils Coil 167 194 - -
Ahy20g3139 433 PANTHER TRANSCRIPTION FACTOR TGA9 26 433 - -
Ahy20g3139 433 Coils Coil 224 244 - -
Ahy20g3139 433 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 151 166 IPR004827 GO:0003700|GO:0006355
Ahy20g3139 433 MobiDBLite consensus disorder prediction 88 150 - -
Ahy20g3139 433 CDD bZIP_HBP1b-like 148 200 - -
Ahy20g3139 433 Pfam Seed dormancy control 230 305 IPR025422 GO:0006351|GO:0043565
Ahy20g3139 433 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 26 433 - -
Ahy20g3139 433 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 146 190 IPR004827 GO:0003700|GO:0006355
Ahy20g3139 433 Gene3D - 147 199 - -
Ahy20g3139 433 Pfam bZIP transcription factor 148 188 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3139 Ahy-Chr20 142036658 142042616 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ahy20g3139 DOG1 1.40E-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g3139 20 142036658 142042616 Ahy20g3139 20 142036658 142042616 ECH
Ahy20g3139 20 142036658 142042616 Ahy10g2579 10 115248801 115254796 hybridization