Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3112 ATGATGGAAGCAATCCATAGATTATTTCTTTGGTTCTTCTTGATGAACATCTTCATCACCATCACCACAACAAGAGCACAATCATCATCACTGAACTACGTTGGAGATGACTGCCAAAACTCATCACAACAATCTCTAACAACTGGATTCAAAACCAACCTCAACAGCCTCCTCTCATGGCTTTCATCTGATGGTGCCACAAGCAAGGGCTACAACTATACCACCGTTGGAACCGCCACACGCGATGTCATCTATGGCTTCTATAACTGCAGAGGTGATGTCACTGGAACCTTCTGCCAGTTTTGCCTCTCGACTGCAGCCTCAGACATTCCTCAGCACTGCCCAAACAGGTCATCAGCAGTGATATGGTATAACTACTGCATATTCAGATACTCCAACCATGCCTTCTATGGTAATCTTACAACTACCCCATCATGGCAAGTTCCTGCGACCAAGAACAGCACCAACAGCACACAAGAACTCCAGAAAGCAGAGACTTATATGCAGATTTTGATAAAGAATGCTACTGCGGAGAACAATTACCTGTTGTATGCAGTGGGTGAGTTCAATGCTGGTGGTTCATTAGGGAAAAGATATGGATTGGTGCAGTGTACTAGGGACCTTACTAGTGACAAGTGTAGGCAGTGTTTGAATGCTATGTTGGATCAAGTTCCTAAATGCTGTGCTTCAAAAGTTGGATGGCAAGTTGGATCTCCAAGCTGTTTGACAAGGTATGATGATTATATGTTCTACAAGATTCAAGGATCTTCTCCCTTGCCTAGTTCAGATGCATTATTGTCCGAGAGCGCTCCTATATCAATAAATTATAACTCTCAAGAAGGTCAAGGAGAAAGTCAAGGAGACGATTCATTGAATGCTGACCTTCCTACAGTCCCTCTAATTTGGATTCGACAGAGCACTAATAACTTTTCAGATTCTTGCAAATTAGGAGAAGGTGGATTTGGTCCTGTTTATAAGGGAAGTTTGCAAGATGGGACAGAAGTTGCCATCAAAAGACTTTCAAAAACATCTGGTCAAGGTTTATATGAGTTCAAGAATGAAGTAATATTCATAGCCAAATTACAACATAGAAACCTTGTGAGACTGTTGGGTTGTTGCGTTGAGCAAAATGAAAAGCTGCTTATATACGAGTACATGTCGAATTCAAGCCTTGCCCTTCACCTATTTGATGTGGAAAAACGAAAGCAACTAAGTTGGAAGGTTCGAATGAATATTATTAAAGGAATCGCACGAGGACTTCTATACCTACACGAAGATTCTAGACTTAGAGTAATTCATAGAGATATGAAAGCTAGTAATGTTCTACTTGATCAAGATATGAATCCAAAAATATCAGATTTTGGATTAGCAAGAACATTTGAAAAAGGCCAGAACGAAGACAGTACTAGAAGGGTTGTGGGTACCTACGGATATATGGCTCCTGAATATGCCATGGAAGGATTATACTCAGTAAAATCCGACGTTTTTAGTTTCGGAGTTCTTCTACTAGAAATCATTTGTGGCAAAAGGAATAATAAATTCCATGTTTCAGAACATGGTCAAAGTCTGCTTGAATATAGTTGGAGACTATGGTGTACAGGAGAATGTTTAAAGATAGTAGATCCTATATTAGAAAATAAATACACAAGAAATGAAGTTACAAGGTGTATACATATTGGTTTATTGTGTGTACAAGAAGATGCAGTAGATCGGCCGACAATGTCCACGGTGGTTGTTATGCTAGCAAGTGAGACAATGACACTTCCTATTCCTAATCATCCTGCATTTTCAGTTGGAAGAAAGATCAAAGAAGAGCCAACATCAAGTGGTTTTGATAAGGATCCTTTGGTCAATGAAGTATCAATTTCAAATATTCTACCTAGATAA 1887 0.3959 MMEAIHRLFLWFFLMNIFITITTTRAQSSSLNYVGDDCQNSSQQSLTTGFKTNLNSLLSWLSSDGATSKGYNYTTVGTATRDVIYGFYNCRGDVTGTFCQFCLSTAASDIPQHCPNRSSAVIWYNYCIFRYSNHAFYGNLTTTPSWQVPATKNSTNSTQELQKAETYMQILIKNATAENNYLLYAVGEFNAGGSLGKRYGLVQCTRDLTSDKCRQCLNAMLDQVPKCCASKVGWQVGSPSCLTRYDDYMFYKIQGSSPLPSSDALLSESAPISINYNSQEGQGESQGDDSLNADLPTVPLIWIRQSTNNFSDSCKLGEGGFGPVYKGSLQDGTEVAIKRLSKTSGQGLYEFKNEVIFIAKLQHRNLVRLLGCCVEQNEKLLIYEYMSNSSLALHLFDVEKRKQLSWKVRMNIIKGIARGLLYLHEDSRLRVIHRDMKASNVLLDQDMNPKISDFGLARTFEKGQNEDSTRRVVGTYGYMAPEYAMEGLYSVKSDVFSFGVLLLEIICGKRNNKFHVSEHGQSLLEYSWRLWCTGECLKIVDPILENKYTRNEVTRCIHIGLLCVQEDAVDRPTMSTVVVMLASETMTLPIPNHPAFSVGRKIKEEPTSSGFDKDPLVNEVSISNILPR* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3112 628 ProSiteProfiles Protein kinase domain profile. 310 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy20g3112 628 Gene3D - 31 136 IPR038408 -
Ahy20g3112 628 Gene3D - 144 250 IPR038408 -
Ahy20g3112 628 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 23 257 - -
Ahy20g3112 628 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 288 626 - -
Ahy20g3112 628 Gene3D Transferase(Phosphotransferase) domain 1 386 588 - -
Ahy20g3112 628 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 257 - -
Ahy20g3112 628 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 288 626 - -
Ahy20g3112 628 CDD STKc_IRAK 316 581 - -
Ahy20g3112 628 ProSiteProfiles Gnk2-homologous domain profile. 142 250 IPR002902 -
Ahy20g3112 628 Pfam Protein tyrosine and serine/threonine kinase 314 578 IPR001245 GO:0004672|GO:0006468
Ahy20g3112 628 Pfam Salt stress response/antifungal 158 248 IPR002902 -
Ahy20g3112 628 Pfam Salt stress response/antifungal 38 133 IPR002902 -
Ahy20g3112 628 Gene3D Phosphorylase Kinase; domain 1 272 385 - -
Ahy20g3112 628 SMART serkin_6 310 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy20g3112 628 Pfam Domain of unknown function (DUF3403) 583 628 IPR021820 GO:0004674
Ahy20g3112 628 SUPERFAMILY Protein kinase-like (PK-like) 295 596 IPR011009 -
Ahy20g3112 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Ahy20g3112 628 ProSiteProfiles Gnk2-homologous domain profile. 32 136 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3112 Ahy-Chr20 141759595 141764801 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3112 13 628 Receptor kinase-like Gene Family AT4G05200 40.675 2.44e-159 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ahy20g3112 PK_Tyr_Ser-Thr 3.20E-48 CL0016