Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3093 ATGTCATTTTCATCTATATCTTTATTTCTTTCTATTTTCTTCTTCCTTTTGTTCTTCATACCATCTTCTTCTTTATCTTTGTCGTCTTTTCCTTCTTCATCTTCTTCTTCTAATGCGTGCAAGTCGACATTGTACCCTAAACTATGTCGCACCATTCTTTCCACAATTCGAAACTCTCCTTCTGATCCGTACGGTTACGGCAAGTTTTCCATCAAACAAAGTCTCAAACAGGCCACAAAACTCGAAAAAGTCTTCAACGACTTTCTAAACCGCCACAATCGCCAGTCCAATAATAATTCTTCCTCTCTAAACAATGCTGAGGTCTCTGCAATCGTCGACTGCAAAGACCTCAACAAGCTCAACGTGGACTATCTTTCGTCCATATCCGCCGAACTCAAATATGCTAATAATAATGCCAACGGCGCCGCGGAGCTCGTCGACAAGATCGAGAGCTATCTCAGCGCCGTGGCCACCAACCACGAGACATGCTACGATGGGTTGGTGGCCACGAAAGGTGGGATAGGTAACGCGCTCGCGGCGTCGTTGAAGGGTGCCACAGAATTATACAGTGTGTCGCTTGGGTTGGTGAGTGTGGCTCTTGATAGGAACATGAAGAAGAATAATAATAAGACCCGCAAACATGGCCTTCCAACCAAGAACTTTATGGTTAGGGAGCCACTTGAGAAGCTCATTAAGATTCTTCGAACAAAGTATAGTTGCAAGAAGTATTCAAATTGTAGCAGAAGCGAAAGGATTCTAAAAGAAAGCAAAAGCCAAGGGATTCTATTGAAAGATTTTGTGATAGTGAGCCATTATGAAGGGAGTGATAACTACAGTTCAATTGGAGAAGCCATTGGTGCTGCACCAAATAACACAATGGCAGAAGATGGTTATTTTGTTGTGTATGTTAGAGAAGGGTATTATGAGGAATATGTTGTTGTTCCAAAAGAAAAGAAGAACATTTTGCTCATTGGAGATGGTATCAACAACACTATTATCACTGGCAATCATAGTGTCATTGATGGTTGGACTACTTTCAATTCTTCTACCTTTGCTGTTAGCGGAGAAAGATTTATTGCGGTGGACATTACTTTCAGAAACACGGCCGGACCGGAAAAACACCAAGCCGTGGCGGTGCGAAACAACGCCGACCTCTCCACATTCTACCGTTGCAGCTTCGAAGGCTACCAAGACACGCTCTACGTCCACTCTCTCCGACAATTCTACAGAGAATGCCACATTTATGGCACCGTTGACTTTATCTTCGGCAACGCCGCCGTAGTCTTCCAAAGCTGCAACATCTACGCCAGAAATCCAATGGCCAATCAAAAGAATGCTGTGACTGCTCAGGGAAGAAATGATCCTAACATGAACACCGGAATCTCGATCCATAACTGCACCATTAGTGCTGCACCGGACTTGAATACTTCGTCCACCATGACCTACTTAGGTAGGCCATGGAAGGAGTATTCGAGGACGGTGTATTTGCAGTCTTATATTGGTGATCTCATAGAACCTTCTGGATGGTTAGAATGGAATGGAACAATTGGGTTGGATACTCTCTTTTATGGAGAATTCAATAATTATGGACCTGGTTCTAACACTAGTAATAGAGTTCATTGGCCTGGTTATGTGCTTTTGAATGCTACACAAGCTTCTAATTTTACTGTTCTTAATTTCACTTTGGGGAATACATGGCTTCCAGATACAGATATACCCTATACTGAAGGCTTGCTAAATTAG 1743 0.4286 MSFSSISLFLSIFFFLLFFIPSSSLSLSSFPSSSSSSNACKSTLYPKLCRTILSTIRNSPSDPYGYGKFSIKQSLKQATKLEKVFNDFLNRHNRQSNNNSSSLNNAEVSAIVDCKDLNKLNVDYLSSISAELKYANNNANGAAELVDKIESYLSAVATNHETCYDGLVATKGGIGNALAASLKGATELYSVSLGLVSVALDRNMKKNNNKTRKHGLPTKNFMVREPLEKLIKILRTKYSCKKYSNCSRSERILKESKSQGILLKDFVIVSHYEGSDNYSSIGEAIGAAPNNTMAEDGYFVVYVREGYYEEYVVVPKEKKNILLIGDGINNTIITGNHSVIDGWTTFNSSTFAVSGERFIAVDITFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECHIYGTVDFIFGNAAVVFQSCNIYARNPMANQKNAVTAQGRNDPNMNTGISIHNCTISAAPDLNTSSTMTYLGRPWKEYSRTVYLQSYIGDLIEPSGWLEWNGTIGLDTLFYGEFNNYGPGSNTSNRVHWPGYVLLNATQASNFTVLNFTLGNTWLPDTDIPYTEGLLN* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3093 580 Gene3D - 267 580 IPR012334 -
Ahy20g3093 580 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 199 IPR035513 -
Ahy20g3093 580 PANTHER PECTINESTERASE 13 578 - -
Ahy20g3093 580 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 198 IPR035513 -
Ahy20g3093 580 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 191 IPR006501 GO:0004857
Ahy20g3093 580 Pfam Plant invertase/pectin methylesterase inhibitor 37 194 IPR006501 GO:0004857
Ahy20g3093 580 ProSitePatterns Pectinesterase signature 2. 414 423 IPR033131 -
Ahy20g3093 580 CDD PMEI-like_3 39 197 - -
Ahy20g3093 580 SUPERFAMILY Pectin lyase-like 266 577 IPR011050 -
Ahy20g3093 580 Pfam Pectinesterase 271 563 IPR000070 GO:0030599|GO:0042545
Ahy20g3093 580 PANTHER PECTINESTERASE 13 578 - -
Ahy20g3093 580 SMART PMEI_2 31 195 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3093 Ahy-Chr20 141605852 141613258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3093 39 580 Carbohydrate Esterase AT3G10720 60.695 0.0 683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g3093 20 141605852 141613258 Ahy20g3093 20 141605852 141613258 ECH
Ahy20g3093 20 141605852 141613258 Ahy10g2532 10 114846894 114854472 hybridization