Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2995 ATGAGTGGTGCTGGGAACATGTCTGATAATAAGGATCCGGGTATCATGCTCTTTGGCATGAAGATTCCTTTGCCGGAGTTTCAGATTCCAGCCAGCTCTCAAATGGGTTGTCAAATTCAGGCAAACTTTGCAGCCATGAGTTCTTGCAGCAGCCTGAAGAAGAAAGAAGTAGAAACTCAGTCTGCTCAAAACTCTGAGCAAGAAAAGAATACTTGCGGATCAAGCTACAGCAAACAAGAATCCAAGAACACTGAGGAAGGAAATGAGGAGAGTAGTAACACAGATCAAGAAAGAAGTTTCAAGAAGCCAGAAAAGATTCTTCAGTGTCCACGCTGCAACAGTTTGGAGACAAAGTTTTGTTATTTCAACAACTACAACGTCAATCAACCGCGGCACTTCTGCAAGAACTGTCAAAGATATTGGACTGCTGGTGGTACGATGAGGAATGTTCCGGTGGGAGCCGGAAGGCGGAAGAATAAGCACCTGGCCTCTCAATTCCAGCACATAATAGTATCCGAGGGAACTCCGGCCGCAAGGTTAGAACCAAAAGAAGATTCATCTGGTAACAATGGTTCTGTGTTGAAATTTGGTCCAGATGTTCCTCTCTGTGAATCCATGGAGTCAATGCTTAGTCTTCGAGATCAGAAGGCAAATGTTGATGCAGCAAGCTCATCGAATTCTTATTTTCAAAATGAATCGTTAGAACGAAAGTGTTACCCTGTTCCTCCATGGATATTTTCTTGGAATCCAGGTTGGAATAATGGTGGTTCTCCGGTGCCTTTGACTTTTCCGGCAACAATGAGGGGAGTTCCAACCATTTCGCCACCGAATATTCCGTTGCAATTTGTTCCTGGAAGTTTCTGGAACAGAGCACAAGTGTGGCCTTTACAAACCGCCGCAGTTTCAATAGGATCCAACGGTTGTCTTTCACCCTCTTCCTCTACTACAAGTAACAGTTGCTGCTCCGGCAATGGCTCTCCGACGCTCGGAAAACACACCAGAGATGGTAATGTCTTCATGGACGACGAGAAATCGGAGATATGTGTTTTGGTTCCAAAGACACTTAGAATTGATGGCCCAAATGAGGCTTCAAGAAAGCACTTGTATGAATCAGAAAATGGTGTTTCTAAAAAGGTGGAACAAAAAGGACAAGACAAAGAGCGTGTATTAGGTGTGTCTCAAATCTTGGAAGCTAACCCTGCAGCAATTTCTCGTGTTCATGCATTTCAAGAGAGCACACAATGA 1245 0.4418 MSGAGNMSDNKDPGIMLFGMKIPLPEFQIPASSQMGCQIQANFAAMSSCSSLKKKEVETQSAQNSEQEKNTCGSSYSKQESKNTEEGNEESSNTDQERSFKKPEKILQCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQFQHIIVSEGTPAARLEPKEDSSGNNGSVLKFGPDVPLCESMESMLSLRDQKANVDAASSSNSYFQNESLERKCYPVPPWIFSWNPGWNNGGSPVPLTFPATMRGVPTISPPNIPLQFVPGSFWNRAQVWPLQTAAVSIGSNGCLSPSSSTTSNSCCSGNGSPTLGKHTRDGNVFMDDEKSEICVLVPKTLRIDGPNEASRKHLYESENGVSKKVEQKGQDKERVLGVSQILEANPAAISRVHAFQESTQ* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2995 414 ProSitePatterns Zinc finger Dof-type signature. 109 145 IPR003851 GO:0003677|GO:0006355
Ahy20g2995 414 ProSiteProfiles Zinc finger Dof-type profile. 107 161 IPR003851 GO:0003677|GO:0006355
Ahy20g2995 414 MobiDBLite consensus disorder prediction 55 102 - -
Ahy20g2995 414 Pfam Dof domain, zinc finger 105 161 IPR003851 GO:0003677|GO:0006355
Ahy20g2995 414 MobiDBLite consensus disorder prediction 55 81 - -
Ahy20g2995 414 MobiDBLite consensus disorder prediction 82 102 - -
Ahy20g2995 414 PANTHER CYCLIC DOF FACTOR 2 7 412 IPR045174 GO:0003700|GO:0006355
Ahy20g2995 414 PANTHER CYCLIC DOF FACTOR 3-LIKE 7 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2995 Ahy-Chr20 140684294 140687436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2995 12 413 C2C2-Dof Transcription Factor Family AT5G39660 34.631 7.61e-66 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy20g2995 zf-Dof 4.30E-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2995 - - aip:107621760 808.905