Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2396 ATGCAAGACTCACCTTCCACCGCCCCCGCTGGTGGCAGGTTTTTCGGCGGAGGAGTCGGAGACAGGAGGCTCAGGCCTCACAACCAGCACCAGGAACCGTTGAAGTGCCCTCGGTGTGATTCGCTCAACACTAAGTTCTGCTATTACAACAACTACAACCTCTCTCAGCCGCGCCACTTCTGCAAGAACTGTCGCCGCTACTGGACCAACGGCGGCGTCCTCCGTAACGTCCCCGTCGGCGGAGGTTGTCGGAAATCCAAATCCAAGCGCTCCAACGCGAAGTCCAAGAAAAGCAACAACAACAACTGCTCCTCCTCTTTGGAAGCCGCTCCGGAAACAACAACACCGCAACCGCAATTGCCGGAGGGAAATTTGAACTCGAACTCGAACTCGAACTCTGGCAGCGAAAGCTCCAGCCTCACCGCCATCGCCACTAGCTCCGCCGCCACGGAGGCGGTGTCTGCAGCGACGTCAAACGCTGCGTTGAGCAAGAATCCGGTCCCCGACGAGAACGTGAATAGCTCTAACTTCACTGGTGGCGGTGGTTATTACGGTGGCTTCTCTGACATAGGAACATTCACGAGCCTTATGAGTTCAGCAAACGAAACGATGTCGTTTGGTTTTGAAAACAATGTTAACGTTCTCGATGCGACGTTGTTTCGTTTCGGTAATGATGATGGCGAGTGGCTGCAGCAGAAAGTTATCGGAAATGGAAGCGACGATCAGCGTAATAATAATAATAATAATCAGGAGTTTGCATCGGAGCCGTTGATGCTGGATCAGACGGGTCCTGTTGAGTTGTCGTCGCTGCAGAATGGGAAAGTTGGCAACGGAGGATGTGGACCGTTGGATTGGCATGCAGCTGGTGGTGATGGTTCGGATCATGATCATGATTTGTTTGATCTTACTAGCGCCGTTGATCAGAGTTACTGGACCCACACTCACTGGTCTGATCAAGATAACAATCCAAATCTCTTTCATCTTCCTTGA 990 0.5222 MQDSPSTAPAGGRFFGGGVGDRRLRPHNQHQEPLKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTNGGVLRNVPVGGGCRKSKSKRSNAKSKKSNNNNCSSSLEAAPETTTPQPQLPEGNLNSNSNSNSGSESSSLTAIATSSAATEAVSAATSNAALSKNPVPDENVNSSNFTGGGGYYGGFSDIGTFTSLMSSANETMSFGFENNVNVLDATLFRFGNDDGEWLQQKVIGNGSDDQRNNNNNNQEFASEPLMLDQTGPVELSSLQNGKVGNGGCGPLDWHAAGGDGSDHDHDLFDLTSAVDQSYWTHTHWSDQDNNPNLFHLP* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2396 329 MobiDBLite consensus disorder prediction 78 142 - -
Ahy20g2396 329 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 315 IPR045174 GO:0003700|GO:0006355
Ahy20g2396 329 MobiDBLite consensus disorder prediction 1 35 - -
Ahy20g2396 329 ProSiteProfiles Zinc finger Dof-type profile. 34 88 IPR003851 GO:0003677|GO:0006355
Ahy20g2396 329 MobiDBLite consensus disorder prediction 95 142 - -
Ahy20g2396 329 Pfam Dof domain, zinc finger 32 88 IPR003851 GO:0003677|GO:0006355
Ahy20g2396 329 ProSitePatterns Zinc finger Dof-type signature. 36 72 IPR003851 GO:0003677|GO:0006355
Ahy20g2396 329 PANTHER DOF ZINC FINGER PROTEIN 4 17 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2396 Ahy-Chr20 128666996 128668500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2396 21 329 C2C2-Dof Transcription Factor Family AT5G60850 38.365 6.59e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy20g2396 zf-Dof 5.90E-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2396 - - gmx:778116 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2396 20 128666996 128668500 Ahy20g2396 20 128666996 128668500 ECH
Ahy20g2396 20 128666996 128668500 Ahy10g1910 10 104408151 104409704 hybridization
Ahy11g2059 11 130357356 130358764 Ahy20g2396 20 128666996 128668500 PCT
Ahy1g2867 1 109368280 109369858 Ahy20g2396 20 128666996 128668500 PCT
Ahy20g2396 20 128666996 128668500 Ahy11g2059 11 130357356 130358764 PCT
Ahy20g2396 20 128666996 128668500 Ahy1g2867 1 109368280 109369858 PCT