Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1606 ATGGCTCAGGTTCAAGTTCAGCCTCAGAATGCGATGGCGGGTCCCAACGGAGGAGCAGCTGGTGGTGCTGGTGGAAACCAGTTCGTGACGACGTCGCTTTACGTTGGGGATCTGGACCCGACCGTGACTGAGTCGCAGTTATATGACCTATTCAACCAATTGGGTCAGGTTGTGTCCGTTAGGGTTTGCACCGACCTCACTAGCCGCAGATCGCTCGGTTACGGTTATGTCAATTACAGCAACCCGCAAGATGCTGCCAGAGCACTGGATGTTCTGAACTTCACTCCTCTGAATAACAAGCCTATCCGCATTATGTATTCACATCGTGATCCCAGTATTCGTAAAAGTGGTGCTGGAAACATATTTATCAAGAATTTGGACAAGGCAATTGACCACAAGGCATTGCATGATACATTTTCTTCCTTTGGGAATATCCTTTCTTGCAAGGTTGCTACAGACTCATCTGGTCAGTCAAAAGGGTATGGGTTTGTGCAATTCGATAGCGAAGAAGCTGCTCAGAAAGCCATAGAAAAGCTGAATGGCATGCTGTTGAACGATAAGCAAGTGTATGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGAAAGTGCCACTGACAAGGCAAAATTTAACAATGTGTTTGTGAAGAACCTATCTGAGTCAACCACGGATGATGATTTGAACAAGGTTTTTGGTGAATTTGGGACCATTACCAGTGCTGTTGTGATGAGGGATGGTGATGGAAAGTCCAAGTGCTTTGGATTTGTTAACTTTGAGAATCCTGAAGATGCTGCTAGGGCTGTTGAAGCACTTAATGGCAAAAAATTTGATGACAAAGAATGGTATGTTGGAAAAGCACAAAAGAAATCTGAAAGGGAGCATGAGTTAAAACAAAAATTTGAGCAGAGCATGAAAGAAGCTGCTGACAAATACCAAGGGGCAAACTTGTACATCAAAAACTTAGATGATACCATTGGAGATGATAAACTTAAGGAGCTGTTCTCCCCATTTGGCACTATTACCTCTTGCAAGGTTATGAGGGACCCTAATGGAATCAGTCGAGGATCAGGGTTTGTTGCATTCTCAACTCCTGAGGAGGCCTCTAGAGCTCTCTTGGAGATGAATGGCAAAATGGTGGTAAGCAAACCCCTCTATGTGACTCTTGCCCAGCGGAAGGAAGATAGAAGAGCTAGATTGCAGGCTCAGTTTGCTCAAATGCGGCCCATTGCGATGGGACCCACTGTTGGTCCTCGGGTGCCAATGTATCCCCCTGGTGGTCCAGGTATTGGTCAACAAATATTTTATGGTCAAGGCCCTCCTGCTATCATTCCTTCCCAGCCTGGGTTTGGTTATCAACAACAACTTGTGCCTGGTATGAGGCCTGGCGGGGCTCCTGTTCCAAATTTCTTTGTGCCAATGGTTCAGCAAGGACAGCAAGGGCAGCGTCCTGGTGGAAGACGTGCAGGTGGAGTCCAGCAGTCCCAGCATCCAGTTCCAATGATGTCACCTCAGATGCTTCCTAGGGGACGTATGTATCGTTATCCACCCGCTGGTAGGGTTCCTGATGTTCCCATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCGTATGATGTGGCCGGGATGCCTATGCGTGATGCAACAATCTCCCAGCAAATTCCTATTGGGGCTTTGGCTACTGCATTGGCAAATGCTTCTCCAGAGCAGCAGAGAACGATGCTGGGTGAAAATCTCTACCCTCTGGTGGAACAGTTGGAGCCTGATAATGCTGCCAAGGTGACTGGAATGCTTCTGGAGATGGACCAGACTGAGGTTCTGCACTTGCTTGAGTCACCCGAAGCCCTGAAGGCAAAGGTGGCCGAGGCAATGGACGTCTTAAGGAATGTTGCACAGCAGCAGCAGACTGGCGGTGCTGCTGACCAGCTTGCTTCATTATCACTCAATGACAACCTTGTTTCTTAA 1959 0.4793 MAQVQVQPQNAMAGPNGGAAGGAGGNQFVTTSLYVGDLDPTVTESQLYDLFNQLGQVVSVRVCTDLTSRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVATDSSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESATDKAKFNNVFVKNLSESTTDDDLNKVFGEFGTITSAVVMRDGDGKSKCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYIKNLDDTIGDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPIAMGPTVGPRVPMYPPGGPGIGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPVPNFFVPMVQQGQQGQRPGGRRAGGVQQSQHPVPMMSPQMLPRGRMYRYPPAGRVPDVPMPGVAGGMFSVPYDVAGMPMRDATISQQIPIGALATALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQTGGAADQLASLSLNDNLVS* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1606 652 SUPERFAMILY PABC (PABP) domain 494 646 IPR036053 GO:0003723
Ahy20g1606 652 SMART rrm2_1 120 192 IPR003954 GO:0003676
Ahy20g1606 652 SMART rrm2_1 314 386 IPR003954 GO:0003676
Ahy20g1606 652 SMART rrm2_1 32 105 IPR003954 GO:0003676
Ahy20g1606 652 SMART rrm2_1 211 283 IPR003954 GO:0003676
Ahy20g1606 652 Pfam Poly-adenylate binding protein, unique domain 561 625 IPR002004 GO:0003723
Ahy20g1606 652 CDD RRM4_I_PABPs 312 390 - -
Ahy20g1606 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 287 IPR000504 GO:0003723
Ahy20g1606 652 CDD RRM2_I_PABPs 117 193 IPR045305 -
Ahy20g1606 652 SMART poly_2 565 628 IPR002004 GO:0003723
Ahy20g1606 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 191 IPR000504 GO:0003723
Ahy20g1606 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Ahy20g1606 652 Gene3D - 549 632 - -
Ahy20g1606 652 Gene3D - 24 119 IPR012677 -
Ahy20g1606 652 Gene3D - 195 294 IPR012677 -
Ahy20g1606 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 189 IPR000504 GO:0003723
Ahy20g1606 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 280 IPR000504 GO:0003723
Ahy20g1606 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 103 IPR000504 GO:0003723
Ahy20g1606 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 383 IPR000504 GO:0003723
Ahy20g1606 652 SUPERFAMILY RNA-binding domain, RBD 31 200 IPR035979 GO:0003676
Ahy20g1606 652 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 32 626 IPR006515 GO:0003723
Ahy20g1606 652 SUPERFAMILY RNA-binding domain, RBD 210 394 IPR035979 GO:0003676
Ahy20g1606 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Ahy20g1606 652 PANTHER POLYADENYLATE-BINDING PROTEIN 20 635 - -
Ahy20g1606 652 CDD RRM1_I_PABPs 32 111 - -
Ahy20g1606 652 Gene3D - 120 192 IPR012677 -
Ahy20g1606 652 Gene3D - 295 398 IPR012677 -
Ahy20g1606 652 PANTHER RNA BINDING PROTEIN 20 635 - -
Ahy20g1606 652 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 553 630 IPR002004 GO:0003723
Ahy20g1606 652 MobiDBLite consensus disorder prediction 475 506 - -
Ahy20g1606 652 SMART rrm1_1 120 192 IPR000504 GO:0003723
Ahy20g1606 652 SMART rrm1_1 32 105 IPR000504 GO:0003723
Ahy20g1606 652 SMART rrm1_1 314 386 IPR000504 GO:0003723
Ahy20g1606 652 SMART rrm1_1 211 283 IPR000504 GO:0003723
Ahy20g1606 652 CDD RRM3_I_PABPs 209 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1606 Ahy-Chr20 59716092 59721123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1606 30 651 Eukaryotic Initiation Factors Gene Family AT1G49760 75.513 0.0 926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1606 20 59716092 59721123 Ahy20g1606 20 59716092 59721123 ECH
Ahy16g3514 16 152689028 152693996 Ahy20g1606 20 59716092 59721123 ECH