LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy20g1594	ATGCAAGGTCAAAGAAGGACAACTGGGTCATTCCCTGCTATTGTTGGTATGATGCAAGGGCCTAACTCGAGCGGCACTGATATGAATCATCAGTCTTCTTTGAATCATGTGCAAAGTACCGTAGATTTCCGGTTGTCAGATTATAGAGGGTCCACTGGCGAGACTGCTTGTTTACGAGCTACTGGTCCTAACGTACAGAGTTTTAGTGGCTGGAATACTGGTGAACCGAGTTCTAGACTGAATCTGATCAACCAAGTCAATGATGAAGGTCTAAAATCTGAACATGGTCCATCTTCATCATGTAGTGCTACTGCTGAGGATGGTCTCAGAACAGAGGAAAGGTCATTTGAACCAAATAATATGATTTTTCCAGTTAGTTCAAATACTAATCTACATGGAAATCATTCTAGAATTCAGCCTTCTTTTTTGCAAGGATCCAGCTCCAGTCATATAACCCAGAATGGTAATCTAGATATGGAGCACACAGCACAAGCTGCTAACCGTGGGAAAGGCATAGCAGCAAGTAGCAGTGTGAATCACAATGATAGTGGTGGATATGATAGAGAGCAAACAGCTTTCAGCAGTGCTTCATACAATCGTCATACTGGAACTTCATCCGAAAACCCTGGATTCATGACTTGGGGAAATAGTGGCAGTTCAAGTTCTGCTTTAGTTAATTGGGGTTCTTCCTGCAAGAGAAAGGCCCTTGAAGGTAGTTCTGGTCAACTGTGTACTGGAGGAAGCTCAAACTCTCTTTTACAATCCGAAAATGGATGCTGGCCCACTAATCCTGTTGATCTTAATGTTTCAAGCAGTTTAAATGTTTCAATGCCCTTAGAGGATGTTCCTGTCACTCTTCCTCCATTACAGCTGAACTTGAGAAGTGAAGTGAGACAAGGAGCAACTGATGCATTTCCCTTAATAAATGTCCCAGAAAATGTGGAAAGGCCTCTCAGAAACTTTGATAGGAGAATGGCCCATGTACAGCATCAGGAATCTATACCTCTCAATTTACCATCAGCAGTGAGTTCTAGGCATCATAATCATTCTTCTCCCCATCAAATACCTTGCTCCCACTCGTTTAATGATTCTTTGGAATTGAGGTTAACGCCTGGAGTAAATGCTGCCAATTCTGGTGCTCCTCAGAACCAGTCACCTCCCCTTAACATGCCTCCTTTTCCTTGGAATAGAGCTTCTAACCCTAGAGGGGCTAGAACTTCAACTTCTCATAACTCTGTAGAAAGAGTGGTACAGGAAGATTTTAATATAAGAATTTTTCCAAGAGAGAGTTCTGGGCACCCGACAAATGTACCTGCACCCACAGTACATGAACCAACACCTTGGCGTACATCCTCTGCTAATGCAAACAATTCTGGAGGTGTACCTACTACATCTTGGATGGGATCTAGTTCAAACATCGTTCCATTACCTAATCCCAGCTGGATTGTTAACCCTGAAGTCCCTACAGATAATCTGCAAAGATTGTCAGAGTTCAGTCCTTGGTCTCTTTTTCCATCAATTAGCTCAGCATCCAGTGTTCAGAATGGTCATTCTGCTCCATCTTCTTCAGGATCCTCTTCTATTACTCAGGGGTCCCGCAACAATCAGCCATATCTAAGAGCAGCATTGTTAATGGAAAGGAGGGGTGGTGATGTACTCTCTACTCCGCGAGCATTAACCGTTGACAATGAGGGAAGACGCCGACTAATATCTGAGGATTATATGCTTTTTGACCCTTTCATATATCATGGGATGGCTGAACTGCATGACAGGCACAGAGAAATGCGCCTTGATGTTGATAACATGTCTTATGAGGAATTGTTGGCATTGGAGGAGCGAATTGGAGATGTCAGCACTGGATTGAGCGAGGATGTCATTATGAAGTCAATGAAACAGCAAATATACATGTCTGTTATGGCGGAGTCTTCTACAGATCTTGAGCCTTGTTGTATCTGTCAGGAGGATTATACTGAGGGAGAGAATGTTGGCTCGCTAGATTGTGGACATGAATTTCACAGTAATTGCATCAAGCAATGGCTAATGCAGAAGAACCTTTGCCCCATTTGCAAAACAACAGGCTTAGCTACATGA	2091	0.4309	MQGQRRTTGSFPAIVGMMQGPNSSGTDMNHQSSLNHVQSTVDFRLSDYRGSTGETACLRATGPNVQSFSGWNTGEPSSRLNLINQVNDEGLKSEHGPSSSCSATAEDGLRTEERSFEPNNMIFPVSSNTNLHGNHSRIQPSFLQGSSSSHITQNGNLDMEHTAQAANRGKGIAASSSVNHNDSGGYDREQTAFSSASYNRHTGTSSENPGFMTWGNSGSSSSALVNWGSSCKRKALEGSSGQLCTGGSSNSLLQSENGCWPTNPVDLNVSSSLNVSMPLEDVPVTLPPLQLNLRSEVRQGATDAFPLINVPENVERPLRNFDRRMAHVQHQESIPLNLPSAVSSRHHNHSSPHQIPCSHSFNDSLELRLTPGVNAANSGAPQNQSPPLNMPPFPWNRASNPRGARTSTSHNSVERVVQEDFNIRIFPRESSGHPTNVPAPTVHEPTPWRTSSANANNSGGVPTTSWMGSSSNIVPLPNPSWIVNPEVPTDNLQRLSEFSPWSLFPSISSASSVQNGHSAPSSSGSSSITQGSRNNQPYLRAALLMERRGGDVLSTPRALTVDNEGRRRLISEDYMLFDPFIYHGMAELHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDVIMKSMKQQIYMSVMAESSTDLEPCCICQEDYTEGENVGSLDCGHEFHSNCIKQWLMQKNLCPICKTTGLAT*	697

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy20g1594	696	MobiDBLite	consensus disorder prediction	445	470	-	-
	Ahy20g1594	696	SMART	ring_2	649	689	IPR001841	-
	Ahy20g1594	696	MobiDBLite	consensus disorder prediction	89	106	-	-
	Ahy20g1594	696	PANTHER	ZINC FINGER PROTEIN, PUTATIVE-RELATED	3	696	-	-
	Ahy20g1594	696	MobiDBLite	consensus disorder prediction	120	154	-	-
	Ahy20g1594	696	MobiDBLite	consensus disorder prediction	17	34	-	-
	Ahy20g1594	696	MobiDBLite	consensus disorder prediction	166	189	-	-
	Ahy20g1594	696	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	3	696	IPR045191	GO:0061630
	Ahy20g1594	696	MobiDBLite	consensus disorder prediction	169	189	-	-
	Ahy20g1594	696	Pfam	Ring finger domain	649	690	IPR001841	-
	Ahy20g1594	696	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	613	693	IPR013083	-
	Ahy20g1594	696	MobiDBLite	consensus disorder prediction	509	533	-	-
	Ahy20g1594	696	MobiDBLite	consensus disorder prediction	372	411	-	-
	Ahy20g1594	696	MobiDBLite	consensus disorder prediction	89	154	-	-
	Ahy20g1594	696	CDD	RING-H2_TTC3	648	690	-	-
	Ahy20g1594	696	ProSiteProfiles	Zinc finger RING-type profile.	649	690	IPR001841	-
	Ahy20g1594	696	MobiDBLite	consensus disorder prediction	427	470	-	-
	Ahy20g1594	696	MobiDBLite	consensus disorder prediction	1	34	-	-
	Ahy20g1594	696	SUPERFAMILY	RING/U-box	627	692	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy20g1594	Ahy-Chr20	57216837	57222017	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy20g1594	18	696	C3H Transcription Factor Family	AT2G15530	34.626	2.07e-93	303

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy20g1594	20	57216837	57222017	Ahy20g1594	20	57216837	57222017	ECH
	Ahy16g3516	16	152718332	152725015	Ahy20g1594	20	57216837	57222017	ECH