Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0485 ATGGGTTTGAGTTCTAAGCAGGTTTCAAGTACAGGACTTGATTGGAACAAGGCCTTGTTGCAATCATCACAAAACTTGGAGTTACCATCAAAGATTACTACTATGAAGAAACAACAACAACAACAACAACAACAACAGCAACAACAAATTCAGCAGCAGCAACCAATATTAGAGCCTTTGAGGTGTCCAAGATGTGATTCAACAAACACAAAGTTTTGTTACTACAACAATTACAACAAATCTCAGCCTCGCCATTTCTGTAGAGCTTGCAAGAGGCACTGGACTAAAGGTGGAACCCTCCGCAATGTTCCTGTTGGAGGTGGAAGAAAGAATAAGAGACCAACCAAGAAATCAACAACCACTACTTCTATTAGCACCACCACCACTACCACTGTTACCACCTTAAATGGTGGTGGTGGAAAAATGGAAGTTCAACCTCAGAGTAATCGTCCTCTTCCTCCTCCTCCTCCTACTCTTTACCAATCTATGATTCGTCCACCACCCTTGCTACCACAACAGAATAATAATAATCTATCAGAAGTTAAGGACTTTGGTGGTAGTGGAATGTTTCTGAGTTCATCATCATCAGCTTTGAATCTTCCTCAGAGTCAAAGTCTAATCTTTCCCTTCTCAACAACATCAAGTTCTAGTTTTGATGCAAACCCATGTTCAGTTTCAGCCTCCAATATTTATAGCTATGGTGGAGAAGAGTTTAAGACAATGGAGGAGACAACCATCAATGGTACTAACACACACCTATGGGAGATTCCATTACCTGCTACAACAACAAGTGTTGCTATGGAAATGCCTTCAAATTATTGGGGTTGGGAGGACCTTGATCCTTTGGTCTCAACTGATCTAAATGTTCCTTGGGATGATTCTGATATCAAACCTTGA 897 0.408 MGLSSKQVSSTGLDWNKALLQSSQNLELPSKITTMKKQQQQQQQQQQQQIQQQQPILEPLRCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRPTKKSTTTTSISTTTTTTVTTLNGGGGKMEVQPQSNRPLPPPPPTLYQSMIRPPPLLPQQNNNNLSEVKDFGGSGMFLSSSSSALNLPQSQSLIFPFSTTSSSSFDANPCSVSASNIYSYGGEEFKTMEETTINGTNTHLWEIPLPATTTSVAMEMPSNYWGWEDLDPLVSTDLNVPWDDSDIKP* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0485 298 MobiDBLite consensus disorder prediction 101 152 - -
Ahy20g0485 298 MobiDBLite consensus disorder prediction 33 52 - -
Ahy20g0485 298 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 39 226 IPR045174 GO:0003700|GO:0006355
Ahy20g0485 298 ProSitePatterns Zinc finger Dof-type signature. 62 98 IPR003851 GO:0003677|GO:0006355
Ahy20g0485 298 Pfam Dof domain, zinc finger 60 112 IPR003851 GO:0003677|GO:0006355
Ahy20g0485 298 ProSiteProfiles Zinc finger Dof-type profile. 60 114 IPR003851 GO:0003677|GO:0006355
Ahy20g0485 298 MobiDBLite consensus disorder prediction 117 143 - -
Ahy20g0485 298 PANTHER OS06G0284500 PROTEIN 39 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0485 Ahy-Chr20 4934903 4936681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0485 50 127 C2C2-Dof Transcription Factor Family AT5G60200 65.823 1.70e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy20g0485 zf-Dof 5.00E-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0485 - - gmx:778119 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0485 20 4934903 4936681 Ahy10g0302 10 2721840 2723611 hybridization
Ahy13g3310 13 130076229 130078155 Ahy20g0485 20 4934903 4936681 PCT
Ahy3g3043 3 127504861 127506851 Ahy20g0485 20 4934903 4936681 PCT
Ahy20g0485 20 4934903 4936681 Ahy13g3310 13 130076229 130078155 PCT
Ahy20g0485 20 4934903 4936681 Ahy3g3043 3 127504861 127506851 PCT