Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0434 ATGGAACAAGAAGGAGAAGGAGGAGAAGACACGAACAAGAAGGAGAAGCAAAAGCAGTTAGTGGGAGATGCAAAAGCAGCAGCAGCAGCACAAGTAGCAGTTGCAGTGAAGTGTCCAAGGTGTGATTCCATGAACACCAAATTCTGTTACTACAACAACTACAGCTTGTCGCAGCCTCGCTACTTCTGCAAAGCTTGCAAAAGGTACTGGACACATGGCGGAGCCTTGAGGAACGTTCCCGTTGGTGGCGGTTCTCGCAAGCCCAAGCGTGCAAAGCTTGCTACTAATCATTCCTCAGAAGCTACGGTTGTGGGGGTTCCGGCTCCTTCTTCTGTTTCTTCTGTCACTCCATTTTTCCAAGGTGGTGTTGGTGGGTTTCTGTCTTCTTCTCTTGGTGGTTCTGGTTTTAACAATGTGGGTTCCCATCATTTCTTTGATCAAATGATGATTGGCGGCGCAGATGAACAACAAGGATTCATGATGAATGAGAATAGGGCCCTTCCTCTCATGAACCCTGATGGATCTATGTGGAGTACTTTGATGACCACCACCACTCACATCAACAATAATAACAATTCAAGTGGTGCTTCATCTTCTGCTTCTGCTTCTGCTGATGCTGCTGCTTTGATGCTGAATCAGTGGCCTAGCACTGTCACAAGGTTTCCCCCTCCTCCCCCGGATCCATCATCTTTTTGA 696 0.4756 MEQEGEGGEDTNKKEKQKQLVGDAKAAAAAQVAVAVKCPRCDSMNTKFCYYNNYSLSQPRYFCKACKRYWTHGGALRNVPVGGGSRKPKRAKLATNHSSEATVVGVPAPSSVSSVTPFFQGGVGGFLSSSLGGSGFNNVGSHHFFDQMMIGGADEQQGFMMNENRALPLMNPDGSMWSTLMTTTTHINNNNNSSGASSSASASADAAALMLNQWPSTVTRFPPPPPDPSSF* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0434 231 Pfam Dof domain, zinc finger 36 90 IPR003851 GO:0003677|GO:0006355
Ahy20g0434 231 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 199 - -
Ahy20g0434 231 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 199 IPR045174 GO:0003700|GO:0006355
Ahy20g0434 231 ProSitePatterns Zinc finger Dof-type signature. 38 74 IPR003851 GO:0003677|GO:0006355
Ahy20g0434 231 ProSiteProfiles Zinc finger Dof-type profile. 36 90 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0434 Ahy-Chr20 4415855 4417422 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0434 38 104 C2C2-Dof Transcription Factor Family AT4G21050 73.134 1.72e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy20g0434 zf-Dof 3.80E-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0434 - - aip:107621958 378.637