Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0433 ATGGAGAAGCAGAAGGAGGAAGGGGGAGTAAAGTGCCCTCGATGTGATTCATCAAACACCAAGTTTTGTTACTACAACAACTACAGCTTGTCACAGCCAAGGCACTTCTGCAAAGCCTGCAAGAGATACTGGACAAGAGGTGGAACCCTCAGAAACGTTCCTGTTGGCGGCGGTTCCAGGAAGAACAAGCGTCGTCTCAACCACCCACACCCAAACACTACTTCTTCTCAGATCAACAACAACAACGATGATGTGAATCTCCCCTCCTTATTCCACACCTTCACTTCTGATGCTGCTCTTCAAAATAATCATGTCTTTGCTGCTTCTTCTTCAAGCTATGATTCTATCTTGTTACCTCCAACTATGATGCCGATGCAACAAAACCTCATCAATGGTGGTTATTATTGCCAAAACCAGATCGAGCAGCAGCATCATGTGCCTAATTTCTCTGATCCAAATTCTCTTTATTATTGGAGTAATGCTTTCACTTCTTGGAACAACGATAATAATCATCATCTTACTTCTCTCATCTAA 534 0.4307 MEKQKEEGGVKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGSRKNKRRLNHPHPNTTSSQINNNNDDVNLPSLFHTFTSDAALQNNHVFAASSSSYDSILLPPTMMPMQQNLINGGYYCQNQIEQQHHVPNFSDPNSLYYWSNAFTSWNNDNNHHLTSLI* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0433 177 ProSitePatterns Zinc finger Dof-type signature. 12 48 IPR003851 GO:0003677|GO:0006355
Ahy20g0433 177 ProSiteProfiles Zinc finger Dof-type profile. 10 64 IPR003851 GO:0003677|GO:0006355
Ahy20g0433 177 PANTHER DOF ZINC FINGER PROTEIN DOF2.4-LIKE 2 141 - -
Ahy20g0433 177 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 141 IPR045174 GO:0003700|GO:0006355
Ahy20g0433 177 MobiDBLite consensus disorder prediction 51 81 - -
Ahy20g0433 177 Pfam Dof domain, zinc finger 10 64 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0433 Ahy-Chr20 4399252 4400835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0433 10 64 C2C2-Dof Transcription Factor Family AT1G28310 94.545 1.65e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy20g0433 zf-Dof 1.50E-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0433 - - adu:107468324 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0433 20 4399252 4400835 Ahy20g0433 20 4399252 4400835 ECH
Ahy20g0433 20 4399252 4400835 Ahy10g0254 10 2300967 2302266 hybridization
Ahy13g3356 13 130667215 130670397 Ahy20g0433 20 4399252 4400835 PCT
Ahy3g3089 3 128248989 128251818 Ahy20g0433 20 4399252 4400835 PCT
Ahy20g0433 20 4399252 4400835 Ahy13g3356 13 130667215 130670397 PCT
Ahy20g0433 20 4399252 4400835 Ahy3g3089 3 128248989 128251818 PCT