Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2955 ATGGAGGACCAAAGTACTGTTACTATTAGGGACCCTGCAATTAAGCTTTTTGGTCAGAAGATTCCCCTTCCCGGAGATCCTGATGTTCTTCCCGCCGCGCCCATGGACCATGAACAGGACCTGCATGAAGAAGACGAAGAAGAGGAGGAGGAGGAGCTGGATGACGACGAGGAAGACGGAGAAACCCAAGACACTCACGAGGACAAGGATGCAGAAGCTGAAAATCTTACCACCCAAGAGCAAGAAGCTGATCCTCCTCCAAATGTAGAAGAGGACAAGAAATCAGCCACATCACCTGAGGCTATGGTGAATCCGAAAACACCTGCCATAGAAGAAGATTCTGCAAAATCAAAAAGTGACAAGTCAGATAAGGAACAAGGTGACACATCCATTCCACAAGATCAGAAACCCCTGAAGAAGCCTGATAAGTTGCTTCCATGCCCCCGCTGCAATAGCATGGATACTAAATTCTGTTACTACAACAACTACAATGTAAACCAGCCACGTTATTTCTGCAAAGCCTGTCAACGATACTGGACTGCAGGTGGCACCATGAGGAATGTGCCGGTTGGAGCAGGGCGGCGAAAAAACAAGAACTCTGCCAACCATTATCGCCACATCACAATCTCTGAGGCTCTTCAAGCAGCTAGAATTGATGCTCCTAACGGGACTCATCTCCCTGCTTTGAAAAGCAATGAGAGAGTCCTCAGCTTCGGAATTGATGCCCCAATCTGCGATTCCATGGCATCTGTCCTTAACCTTGGAGAGAAAAAGGTTCTTAATGGCACAAGAAATGGATTCCATCATGGCTTTGATGATCAAAGATTGAAAGTTCCTTCCAAAAGTGGTGAAAACAGCGAAGCTTGCACGAGTTCATCGCCTGTTGCAGTTTCAAATCCAATGGGGGAAAACAGTAAAAGTACTTTCCAAGAACCAATGCTTCCAAGCAACGGTTACCTTCCCCAAGTTCCTTGTATTGCTAGTGTTCCTTGGCCTTATCCGTGGAATGCGGCAATTCCCTCACCAGCTATGTGTCCTCCAGGATTTCCTGCCCTTCCATTCTATCCTGCGGCCTTTTGGAACTGCAGCATGCCAGGGAACTGGAATGTTCCATGGTTTCCTCCACAGTCCTCCCCTTCAAACCCAAAATCTCCAAGTTCCGGACCGAATTCTCCAACTCTGGGGAAGCATTCTAGGGATGGTGACACGGGTAACCAAGATTCTTTGAGCAAAGAAGAGCCACCAAAGCAGAGAAATGGAAGCGTTTTGGTTCCCAAAACGTTGAGAATTGATGACCCAAGTGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGGATCAAGAATGAATCCATTAGTGGGGGAGGCATGTTTAAGGCCTTCCAATCAACAAAAGAAGAAAAGAATCAAGTCGAAGCTTCTCCTGTGTTGCGGGCTAACCCTGCAGCTTTGTCGAGATCCCTTAATTTTCACGAGAGCTCGTGA 1485 0.4714 MEDQSTVTIRDPAIKLFGQKIPLPGDPDVLPAAPMDHEQDLHEEDEEEEEEELDDDEEDGETQDTHEDKDAEAENLTTQEQEADPPPNVEEDKKSATSPEAMVNPKTPAIEEDSAKSKSDKSDKEQGDTSIPQDQKPLKKPDKLLPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSANHYRHITISEALQAARIDAPNGTHLPALKSNERVLSFGIDAPICDSMASVLNLGEKKVLNGTRNGFHHGFDDQRLKVPSKSGENSEACTSSSPVAVSNPMGENSKSTFQEPMLPSNGYLPQVPCIASVPWPYPWNAAIPSPAMCPPGFPALPFYPAAFWNCSMPGNWNVPWFPPQSSPSNPKSPSSGPNSPTLGKHSRDGDTGNQDSLSKEEPPKQRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKNESISGGGMFKAFQSTKEEKNQVEASPVLRANPAALSRSLNFHESS* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2955 494 ProSiteProfiles Zinc finger Dof-type profile. 145 199 IPR003851 GO:0003677|GO:0006355
Ahy1g2955 494 PANTHER CYCLIC DOF FACTOR 2 9 493 IPR045174 GO:0003700|GO:0006355
Ahy1g2955 494 Pfam Dof domain, zinc finger 143 199 IPR003851 GO:0003677|GO:0006355
Ahy1g2955 494 MobiDBLite consensus disorder prediction 281 299 - -
Ahy1g2955 494 PANTHER CYCLIC DOF FACTOR 1 9 493 - -
Ahy1g2955 494 MobiDBLite consensus disorder prediction 375 430 - -
Ahy1g2955 494 Coils Coil 39 59 - -
Ahy1g2955 494 MobiDBLite consensus disorder prediction 271 299 - -
Ahy1g2955 494 MobiDBLite consensus disorder prediction 1 145 - -
Ahy1g2955 494 MobiDBLite consensus disorder prediction 400 414 - -
Ahy1g2955 494 MobiDBLite consensus disorder prediction 40 65 - -
Ahy1g2955 494 MobiDBLite consensus disorder prediction 111 143 - -
Ahy1g2955 494 ProSitePatterns Zinc finger Dof-type signature. 147 183 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2955 Ahy-Chr1 111046383 111049676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2955 10 492 C2C2-Dof Transcription Factor Family AT3G47500 47.800 9.09e-124 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy1g2955 zf-Dof 2.20E-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2955 - - gmx:778113 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1915 11 124626618 124630049 Ahy1g2955 1 111046383 111049676 hybridization