Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2867 ATGCAGGAGATACATTCAATGGGAGGCACCAGGTTCTTCGGCGCCGCTGCTGACAGGAGGCTCAGGCCACACCACCACCACCCTCACCAGAACACCGCTACCAACTGCCACCAGCAGCAAGCACTTAAATGTCCCCGTTGTGACTCACTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCCCAGCCACGCCACTTCTGCAAGAACTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCTGTCGGCGGCGGTTGCCGCAAGTCCAAGCGTTCCAACGACAACAAGACCGCCAAAACCAGCAAAAATAATAATAGTAATAATAATAGCGCCACCGCAACTTCCTCCGCGGAAACGCCGCCGCAAACGACGTCGTCTCAGGCTCCACCGACGGACCAGAACTCCAATTCTCACTCCAGCAGCGAGAGCTCTAACCTCACCGCGGCGGCGGCGGCGGCGACCATCGGCACGACGGAGCTTAACTCTGATTCTTCCAAGTTGTTGATCCACGAGAATAACAACAACAACGCTTCCTCGAACCCTAATTTGGAGAGCGGTATTTTCTCTGAGATAGGGACGCTGACGAGCTTGATGGCTTCTTCCTCTTCGAACAACGATGCATTGGCGTTTGGATTTGGAGGTGGTGGTGTTGTTCCTGATGCGACGTCGTTTCAGTGGCATCAGCAGCAGAAGTTGCCGGAGAATCTGAACGGTAGTGGTGGGAGCTTGCTGGATCATCATGGACACGGTAGTACTGTAACCGTTGATTTGTCGGCACTTCAGAGCAAGACGGGAAACGGTGGATTTGGACCGTTGGATTGGCAAGCTGGTGTGGATCAAGGTTTGTTTGATCTCCCCAACTCCGTTGATCATGCTTACTGGAGTCAAACTCAATGGCCTGATCACGATAATTCTAATCTCTTTCATCTCCCCTGA 951 0.5342 MQEIHSMGGTRFFGAAADRRLRPHHHHPHQNTATNCHQQQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNDNKTAKTSKNNNSNNNSATATSSAETPPQTTSSQAPPTDQNSNSHSSSESSNLTAAAAAATIGTTELNSDSSKLLIHENNNNNASSNPNLESGIFSEIGTLTSLMASSSSNNDALAFGFGGGGVVPDATSFQWHQQQKLPENLNGSGGSLLDHHGHGSTVTVDLSALQSKTGNGGFGPLDWQAGVDQGLFDLPNSVDHAYWSQTQWPDHDNSNLFHLP* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2867 316 MobiDBLite consensus disorder prediction 86 155 - -
Ahy1g2867 316 MobiDBLite consensus disorder prediction 103 155 - -
Ahy1g2867 316 Pfam Dof domain, zinc finger 40 96 IPR003851 GO:0003677|GO:0006355
Ahy1g2867 316 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Ahy1g2867 316 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 303 IPR045174 GO:0003700|GO:0006355
Ahy1g2867 316 PANTHER DOF ZINC FINGER PROTEIN 4 25 303 - -
Ahy1g2867 316 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2867 Ahy-Chr1 109368280 109369858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2867 18 316 C2C2-Dof Transcription Factor Family AT5G60850 41.118 1.42e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy1g2867 zf-Dof 3.00E-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2867 - - adu:107468949 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2059 11 130357356 130358764 Ahy1g2867 1 109368280 109369858 hybridization
Ahy1g2867 1 109368280 109369858 Ahy20g2396 20 128666996 128668500 PCT
Ahy1g2867 1 109368280 109369858 Ahy10g1910 10 104408151 104409704 PCT
Ahy20g2396 20 128666996 128668500 Ahy1g2867 1 109368280 109369858 PCT
Ahy10g1910 10 104408151 104409704 Ahy1g2867 1 109368280 109369858 PCT