Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1000 ATGGCCATGTCTAGAAGAGAAATGGATCGGATCAAAGGCCCGTGGAGCCCGGAAGAAGATGAGGCTCTGCAGAGGCTGGTGGAGAGGCACGGGCCCAGGAACTGGACGTTGATAAGCAAGTACATCCCGGGCCGCTCCGGGAAGTCCTGCAGGCTAAGATGGTGTAACCAACTGTCACCTCAGGTTGAGCACCGGGGCTTCACGCCCGATGAGGATGAGACGATAATCCGGGCCCATGCCCGGTTCGGTAACAAGTGGGCTACAATAGCCCGACTCCTGTCTGGTCGAACTGACAACGCGGTAAAGAATCACTGGAACTCAACACTCAAGCGCAAGTGCTCATCCATGATGATCGACGAGCCTGCAACAGGTCCGGCAGACTTTGACGGCGGTTACTACCTACGGCCCGCGAAGAGGTCTGCGAGCGCAGGTGCTACCATGCCGCTATCCACCGGGCTTCACATGAGCCCGACGTCGCCGGGAAGCCCGTCGGGATCCGACGCGAGTGATTGCAGCGTTCGCGCTGTCTCTCCGTCGCACGTTCTGAGGCCCGTGCAGAGGACCGTTGTTCCTCCGATCGAAACTGCGTCCTCTTCAGAGGACCCTCCGACGTCGTTGTCGCTGTCTCTGCCTGGCGTAGACGTTGCTGTGGAAGTCTCCAATCGTGTCACGGAATCTATGTCACGTGCCTTTTCTCCGGCGATGGTGATGGCTTCGGCGGCGCCTTCAACGGCTGTAACGACAGCGGATCCGCTGCCATTGCCATCGCCACAACATCAAGTTGTAGCGCCGTTTAATTTTAGCGCGGAGCTGATGGCGGTGATGCAAGAAATGATAAGAAAAGAAGTGAGGAGTTACATGGAACAACGCAATGGGATGTGTTTTCAGGCTGCTGGTGGGTTCAGGAACGTTTCGGTAAATCGAGTTGGGATTAGCAAAGTCAACTCGTGA 951 0.5678 MAMSRREMDRIKGPWSPEEDEALQRLVERHGPRNWTLISKYIPGRSGKSCRLRWCNQLSPQVEHRGFTPDEDETIIRAHARFGNKWATIARLLSGRTDNAVKNHWNSTLKRKCSSMMIDEPATGPADFDGGYYLRPAKRSASAGATMPLSTGLHMSPTSPGSPSGSDASDCSVRAVSPSHVLRPVQRTVVPPIETASSSEDPPTSLSLSLPGVDVAVEVSNRVTESMSRAFSPAMVMASAAPSTAVTTADPLPLPSPQHQVVAPFNFSAELMAVMQEMIRKEVRSYMEQRNGMCFQAAGGFRNVSVNRVGISKVNS* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1000 316 MobiDBLite consensus disorder prediction 147 172 - -
Ahy1g1000 316 SMART sant 11 60 IPR001005 -
Ahy1g1000 316 SMART sant 63 111 IPR001005 -
Ahy1g1000 316 CDD SANT 67 109 IPR001005 -
Ahy1g1000 316 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Ahy1g1000 316 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Ahy1g1000 316 PANTHER MYB PROTEIN-RELATED 2 234 - -
Ahy1g1000 316 CDD SANT 14 56 IPR001005 -
Ahy1g1000 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Ahy1g1000 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 113 IPR017930 -
Ahy1g1000 316 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Ahy1g1000 316 Pfam Myb-like DNA-binding domain 67 108 IPR001005 -
Ahy1g1000 316 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Ahy1g1000 316 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 2 234 - -
Ahy1g1000 316 Gene3D - 65 124 - -
Ahy1g1000 316 Gene3D - 11 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1000 Ahy-Chr1 17414505 17416121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1000 4 314 MYB Transcription Factor Family AT4G37260 51.360 1.58e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy1g1000 Myb_DNA-binding 1.10E-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1000 11 22159091 22160604 Ahy1g1000 1 17414505 17416121 hybridization
Ahy1g1000 1 17414505 17416121 Ahy5g0602 5 7682308 7684070 PCT