Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3278 ATGGCAATCCAACATCACAATGACCAACTAGAACAACAACAACATCACCACCAACACGCTGTCCTCGATGCCCTTTACTGCGACGAAGGAAAGTGGGAAGAAGAAGAAGAAGAGTTCTCAGGAGAGAGTGATGTCACAACAAACCACGACCATGAAGAAGAAGATGATGATGGTGTCAACTTCAACTTGAACTTCCATTCCCTTGACCCTCTGCTCTTGTTGGAGCAGGACATGTTCTGGGAAGATGAAGAGCTCAACACCCTCTTCTCCAAAGAGAAGCTTGACCAAGAAGCCTATTATAACAATGCCGATGATGTCATGAAAGCATTGGATCCTTCTTCTTCTTCTTCTTCTTCTTCTGTGTGTATGGCTCGTCGTGAAGCAGTTGAATGGATGCTTAAGGTGAATGCTCATTACGGGTTCTCAGCTCTGACGGCAACACTTGCCGTTACTTATCTGGATAGGTTCCTCTTGAGCTTCCATTTTCAAAGGGAGAAGCCATGGATGATCCAACTTGCCTCTGTCACTTGCATCTCTTTGGCTGCTAAAGTTGAAGAAACTCAAGTGCCTCTTCTCTTGGACCTTCAAGTTGAAGATGCAAAATATGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTTCTGATTCTGTCCACCTTGAATTGGAAGATGCACCCTGTGACACCACTCTCATTTCTAGATCACATTATAAGGAGGTTGGGACTCAAAACACATCTTCACTGGCAGTTTCTCAAGCGTTGTGAGAATCTTCTTCTCTCTTTGCTATTGGATTCAAGATTTGTTGGTTGTCTTCCTTCTGTATTGGCCACTGCAACAATGCTGAATGTAATAGGCCAGATTCATCACAGCACTGAGGGAGTGGAATACAAAAACCAACTTCTTAGTGTTCTCAACATTAACAAGGAGAAGGTAGATGAATGTTATAATGGCATAGTGGAGGTGACAAATAACAATAATAATGGTGGTAGGGGGAAGAAGAGAAAGTATGAGGAAATCCCTGGTAGCCCAAGTGGCGTAATTGATGCAGTGTTCAGCTCTGATGATGGTTCCAACGATTCATGGGAAGTGGTGGGGTCATCATTGTTATGTTCATCACCATCACAAGAGGAGCCTCAGCCTCAGCCTCTCTTGAAGAACAAGAAACAACAATTGAAATTGTCATCACTTAACAGGGTCATTGTCGGAATTGTTGGCACCACCCCATAA 1227 0.436 MAIQHHNDQLEQQQHHHQHAVLDALYCDEGKWEEEEEEFSGESDVTTNHDHEEEDDDGVNFNLNFHSLDPLLLLEQDMFWEDEELNTLFSKEKLDQEAYYNNADDVMKALDPSSSSSSSSVCMARREAVEWMLKVNAHYGFSALTATLAVTYLDRFLLSFHFQREKPWMIQLASVTCISLAAKVEETQVPLLLDLQVEDAKYVFEAKTIQRMELLILSTLNWKMHPVTPLSFLDHIIRRLGLKTHLHWQFLKRCENLLLSLLLDSRFVGCLPSVLATATMLNVIGQIHHSTEGVEYKNQLLSVLNINKEKVDECYNGIVEVTNNNNNGGRGKKRKYEEIPGSPSGVIDAVFSSDDGSNDSWEVVGSSLLCSSPSQEEPQPQPLLKNKKQQLKLSSLNRVIVGIVGTTP* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3278 408 MobiDBLite consensus disorder prediction 32 58 - -
Ahy19g3278 408 SUPERFAMILY Cyclin-like 116 225 IPR036915 -
Ahy19g3278 408 Pfam Cyclin, C-terminal domain 227 336 IPR004367 -
Ahy19g3278 408 CDD CYCLIN 125 217 IPR013763 -
Ahy19g3278 408 Gene3D - 123 225 - -
Ahy19g3278 408 SMART Cyclin_C_2 227 355 IPR004367 -
Ahy19g3278 408 PANTHER CYCLIN D3.1 PROTEIN 58 366 - -
Ahy19g3278 408 ProSitePatterns Cyclins signature. 125 156 IPR006671 -
Ahy19g3278 408 PANTHER CYCLINS 58 366 IPR039361 -
Ahy19g3278 408 MobiDBLite consensus disorder prediction 42 58 - -
Ahy19g3278 408 Pfam Cyclin, N-terminal domain 123 224 IPR006671 -
Ahy19g3278 408 SMART cyclin_7 130 218 IPR013763 -
Ahy19g3278 408 Gene3D - 226 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3278 Ahy-Chr19 155886328 155888273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3278 1 321 Core Cell Cycle Gene Families AT4G34160 53.271 6.49e-107 318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3278 19 155886328 155888273 Ahy19g3278 19 155886328 155888273 ECH
Ahy17g3258 17 134724152 134725527 Ahy19g3278 19 155886328 155888273 ECH
Ahy16g3491 16 152326985 152329557 Ahy19g3278 19 155886328 155888273 ECH
Ahy19g3278 19 155886328 155888273 Ahy9g2360 9 112443718 112445670 hybridization
Ahy5g0604 5 7705357 7707861 Ahy19g3278 19 155886328 155888273 PCT