Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3246 ATGGCTTCACGAAGGATTGTTTCCTCTCTGATTCGATCTTCACTTCGCCGCGGATCTCAATCCAACCCTTCCATTGCCGCATCGGCTTCCAGGCTCGCCTCCCGAAGCCGCGGCGGTGCATCTCCCGCTGGATATATCCTCAACCGCGTTGCCGAGTATGCCACCTCGGCCGCCGCCGCCGCCGCTCCCTCACCACAGCCTCCCGCAAAGAAGGAATCCGGTGGTGGAGGTAAGATCACCGATGAGTTCACTGGTAAGGGTGCGATCGGTCAAGTGTGCCAGGTCATCGGTGCCGTCGTCGATGTGAGATTCGAGGAGGGTTTGCCTCCCATCCTGACTGCGCTCGAGGTGCTAGATCATTCTTCCAGACTGGTGCTGGAGGTGGCTCAGCATTTGGGTGAGGGTGTTGTCAGAACCATTGCTATGGATGGTACTGAAGGTGTTGTCAGAGGGTGGCGCGTGCTTAACACCGGATCCCCTATCACCGTTCCTGTTGGCAGGGCAACCCTTGGACGTATTATCAATGTCATTGGAGAGCCTATTGATGAGAAGGGTGATCTAAAAACTGAGCATTACTTGCCCATTCACAGAGAAGCTCCTGCTTTTGTTGAGCAAGCCACTGAGCAACAGATTCTTGTCACAGGAATCAAGGTTGTCGATCTGCTTGCACCATACCAAAGAGGAGGAAAGATTGGGTTGTTTGGTGGTGCTGGTGTGGGTAAAACTGTGCTCATTATGGAGCTCATTAACAACGTTGCCAAGGCTCATGGTGGTTTCTCTGTGTTTGCCGGTGTTGGAGAAAGAACCCGTGAGGGTAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATCAAGCTAGGTGACAAGCAGAGTGAAAGCAAATGTGCTCTTGTGTACGGTCAAATGAATGAGCCCCCGGGTGCTCGTGCCCGTGTTGGTCTTACTGGGCTTACTGTTGCTGAGCACTTCCGTGATGCTGAAGGGCAAGATGTGCTCCTCTTTGTTGACAACATTTTCCGCTTTACTCAGGCTAACTCAGAGGTGTCTGCTTTGCTTGGACGTATCCCATCTGCTGTGGGTTACCAACCAACCTTGGCCACTGATCTTGGAGGTCTTCAAGAGCGTATTACAACCACCAAGAAGGGTTCAATTACCTCTGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTACCACCTTTGCTCACTTGGATGCTACAACAGTGTTATCACGACAGATCTCCGAGCTGGGTATCTATCCCGCCGTGGACCCCTTGGATTCCACATCTCGTATGCTTTCCCCACTTATCTTGGGTCAGGATCACTACGAAACTGCTCGTGGTGTCCAGAAGGTTCTTCAAAACTACAAGAATCTTCAAGATATTATTGCTATTTTGGGAATGGACGAGCTCAGTGAAGATGATAAATTGACTGTTGCCCGTGCCCGTAAGATTCAAAGATTCTTGAGCCAGCCTTTCCATGTTGCAGAAGTATTCACGGGTGCCCCAGGCAAATATGTTGAGTTGAAGGAGAGCATTAACAGCTTCCAGGGTGTGTTGGATGGCAAATACGATGACCTGCCAGAGCAGTCATTTTACATGGTTGGCGGTATTGAAGAGGTCATTGCAAAGGCAGAGAAGATTGCTAAGGAATCAGCGTCTTAG 1683 0.5056 MASRRIVSSLIRSSLRRGSQSNPSIAASASRLASRSRGGASPAGYILNRVAEYATSAAAAAAPSPQPPAKKESGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFEEGLPPILTALEVLDHSSRLVLEVAQHLGEGVVRTIAMDGTEGVVRGWRVLNTGSPITVPVGRATLGRIINVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGQDHYETARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESINSFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAKESAS* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3246 560 PIRSF ATPase_subunit_beta 6 560 - -
Ahy19g3246 560 ProSitePatterns ATP synthase alpha and beta subunits signature. 427 436 IPR020003 GO:0005524
Ahy19g3246 560 MobiDBLite consensus disorder prediction 1 35 - -
Ahy19g3246 560 MobiDBLite consensus disorder prediction 59 82 - -
Ahy19g3246 560 Hamap ATP synthase subunit beta [atpB]. 87 554 IPR005722 GO:0015986|GO:0045261|GO:0046933
Ahy19g3246 560 Pfam ATP synthase alpha/beta family, beta-barrel domain 92 158 IPR004100 GO:0046034|GO:1902600
Ahy19g3246 560 CDD ATP-synt_F1_beta_N 88 161 - -
Ahy19g3246 560 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 86 160 IPR036121 GO:0046034|GO:1902600
Ahy19g3246 560 Gene3D - 161 438 IPR027417 -
Ahy19g3246 560 Gene3D - 78 160 - -
Ahy19g3246 560 Pfam ATP synthase F1 beta subunit 1 49 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Ahy19g3246 560 MobiDBLite consensus disorder prediction 1 41 - -
Ahy19g3246 560 Gene3D ATP synthase, F1 beta subunit 1 53 IPR042079 -
Ahy19g3246 560 Gene3D - 439 560 IPR024034 -
Ahy19g3246 560 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 439 555 - -
Ahy19g3246 560 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 215 436 IPR000194 GO:0005524
Ahy19g3246 560 PANTHER ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 3 559 - -
Ahy19g3246 560 CDD ATP-synt_F1_beta_C 443 550 - -
Ahy19g3246 560 CDD F1-ATPase_beta 160 441 - -
Ahy19g3246 560 SMART AAA_5 227 499 IPR003593 -
Ahy19g3246 560 TIGRFAM atpD: ATP synthase F1, beta subunit 89 554 IPR005722 GO:0015986|GO:0045261|GO:0046933
Ahy19g3246 560 PANTHER ATP SYNTHASE 3 559 - -
Ahy19g3246 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 442 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3246 Ahy-Chr19 155621956 155625264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3246 125 497 Primary Pumps ATPases(2) AT1G20260 28.500 2.77e-30 122
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3246 19 155621956 155625264 Ahy19g3246 19 155621956 155625264 ECH
Ahy19g3246 19 155621956 155625264 Ahy9g2395 9 112778412 112781723 hybridization