Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3232 ATGCATAACAAGGAAGCTTGCTCTCCCTCCTCCAATGGCGGATTTGGCGCCAACACCGCCACAGGCTGTACTCAAATTCAGTCCAATGGCGGTGCATTGGCTTCGTTCTACTCTGCTCTCTTGAACGACAATCCGTCGCTCTCGGCGAATAGCAGCAGCTCGCTTTACCCGTACTCTGAGTCGGGAACTCAGATCAACTCGTACGACTCTTGCGTCATACAGAAGCACCAGGACATGGTGAATCGTCACAGCATGTGCCTCAATCGCCTCGTGGAGACTTCCAAGGAGGTAGAATCTCTGCGACAAGAGAACGCACATCTCCGTGCGGTGAACAAGGAGCTCCAGAAGCAGCTCAACTTCGTCATCCAGGCTTCGCTGGAGAACCAATTCGGTGGCGGCTCCTCCTGCCAGGGTCAAACGACGCCGTTCGACGTGGTGCATGGATTCCGCGGGTTTCAGATTGGGGAAGGAAAAGAGAATTGCGGTGATTGGAATAGTAACAACACCAACAATAATAGCAATAACAATAAGGAGCAGGAAGTTTCGGACGAGAGTCCAACGAGCGTGATTGAGAACAACGGCGTTGAGGTTGAGAGGTTCTCTCTCCCAAAGAGCATATCTGTGAGGTCCAATGGTTACCTGAAGATGGCTCAGTCTGCTGCTGCAGCTACTGCCACCAACACCACTACCTGTCGCACTAAGCCTACTACTCGCCCACGCGTCTCCTCCACTCCACCTGATGCCGTTCAAAAGGTATATGTGCGTGGAGGGAAGACAGAGGAAGAGCCTCTTGAGATGGTGGTTTATAACCAAGGGATGTTCAAGACTGAGCTGTGCAATAAATGGCAGGAAACAGGGACGTGCCCATATGGAGACCACTGCCAATTTGCTCATGGCATAGGGGAGCTTCGCCCAGTGATCCGCCACCCCCGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGTGTTGTATGTCCATATGGCCATAGATGCCATTTCCGCCACGCACTCACTGAACAAGAGAAAGCTATATCACATCCTAAGTCCAGAACAATCAAGCTCGAAAGATAG 1074 0.5196 MHNKEACSPSSNGGFGANTATGCTQIQSNGGALASFYSALLNDNPSLSANSSSSLYPYSESGTQINSYDSCVIQKHQDMVNRHSMCLNRLVETSKEVESLRQENAHLRAVNKELQKQLNFVIQASLENQFGGGSSCQGQTTPFDVVHGFRGFQIGEGKENCGDWNSNNTNNNSNNNKEQEVSDESPTSVIENNGVEVERFSLPKSISVRSNGYLKMAQSAAAATATNTTTCRTKPTTRPRVSSTPPDAVQKVYVRGGKTEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAISHPKSRTIKLER* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3232 357 MobiDBLite consensus disorder prediction 226 245 - -
Ahy19g3232 357 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 40 349 - -
Ahy19g3232 357 SMART c3hfinal6 273 300 IPR000571 GO:0046872
Ahy19g3232 357 SMART c3hfinal6 311 338 IPR000571 GO:0046872
Ahy19g3232 357 ProSiteProfiles Zinc finger C3H1-type profile. 273 301 IPR000571 GO:0046872
Ahy19g3232 357 PANTHER CCCH ZINC FINGER/TIS11-RELATED 40 349 IPR045877 GO:0003729
Ahy19g3232 357 MobiDBLite consensus disorder prediction 226 244 - -
Ahy19g3232 357 MobiDBLite consensus disorder prediction 160 187 - -
Ahy19g3232 357 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 299 IPR000571 GO:0046872
Ahy19g3232 357 Gene3D - 268 306 - -
Ahy19g3232 357 Gene3D - 307 343 - -
Ahy19g3232 357 Coils Coil 90 117 - -
Ahy19g3232 357 SUPERFAMILY CCCH zinc finger 307 341 IPR036855 GO:0046872
Ahy19g3232 357 SUPERFAMILY CCCH zinc finger 270 305 IPR036855 GO:0046872
Ahy19g3232 357 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Ahy19g3232 357 ProSiteProfiles Zinc finger C3H1-type profile. 311 339 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3232 Ahy-Chr19 155448796 155451807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3232 72 355 C3H Transcription Factor Family AT1G68200 51.370 1.22e-84 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy19g3232 zf-CCCH 2.90E-12 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3232 19 155448796 155451807 Ahy19g3232 19 155448796 155451807 ECH
Ahy19g3232 19 155448796 155451807 Ahy9g2409 9 112979059 112982094 hybridization