Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3180 ATGTCCACAATAATAGCAAAGAGAGAGATTGGTTCTTCCAATGAAGAAGAAACTGATTTGAGAAGAGGACCTTGGACTCTTGAAGAGGATAGTTTACTCATTCATTATATTGCTCGTCATGGTGAGGGTCGTTGGAATATGTTAGCCAAAAGTGCAGGACTGAAGAGAACTGGAAAAAGCTGCAGGCTGAGATGGCTTAATTACTTGAAACCTGACATTAAGAGAGGCAACCTTACCCCACAAGAACAGCTCTTGATCCTTGAACTCCATTCCAAGTGGGGTAACAGGTGGTCAAAAATTGCTCAGCATCTTCCAGGAAGAACAGACAACGAGATCAAGAATTATTGGAGAACAAGGGTACAGAAACAGGCACGCCAACTCAACATTGAATCTGGAAGCAAGAGATTCATTGATGCTGTTAAGTGTTTCTGGATGCCAAGATTGCTTCAAAAGATGGAACAGAGTTCTGCTTCAAATTCCCCTAAGATCATGAACAACTTTAACAATCATGCAGAAGCTTCTTCAATGAGTACTTCACCAATCTCAAACTTCTCCAACAACATTCCTAATTCTCTATCTCCACCACAAAGGGAATTATTCATGGATGTTCCAAGTAATCATCACTTCAGCAATATGTCCAGCCCCAACAACAATAATGTTCCTCCTTCCTCTGATTCACTTCAATTCTCACAGCTATTTGAGATGTCACAACACTTAACATCAGCAAGTCCTCCCAATGTGTTTGAGAACTACAATGTTTATTACAACAACAATCCAATGATTCAAGAAAACTGGAATAATGTTGTTGATGCCAATGGCAATAATAATAATAATATTAATAACTATGGTGCCATGGTGGAAGGACTAAGCATGGATCCTCTGTCACCAATGGGAACTTATTATGACATTCCACAGTTTGATTTTCAAACCTGTGGGAGTGACTGGATTTTAGACAACAACAACAACATGGGTGATACTTTATGGAACATGGATTCTATGTAA 1002 0.3922 MSTIIAKREIGSSNEEETDLRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQSSASNSPKIMNNFNNHAEASSMSTSPISNFSNNIPNSLSPPQRELFMDVPSNHHFSNMSSPNNNNVPPSSDSLQFSQLFEMSQHLTSASPPNVFENYNVYYNNNPMIQENWNNVVDANGNNNNNINNYGAMVEGLSMDPLSPMGTYYDIPQFDFQTCGSDWILDNNNNMGDTLWNMDSM* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3180 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 69 IPR017930 -
Ahy19g3180 333 CDD SANT 24 69 IPR001005 -
Ahy19g3180 333 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Ahy19g3180 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Ahy19g3180 333 Gene3D - 78 120 - -
Ahy19g3180 333 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 7 332 IPR044676 GO:0003700|GO:0006355|GO:0043565
Ahy19g3180 333 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Ahy19g3180 333 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 37 46 IPR001345 GO:0003824
Ahy19g3180 333 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Ahy19g3180 333 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Ahy19g3180 333 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Ahy19g3180 333 SMART sant 21 71 IPR001005 -
Ahy19g3180 333 SMART sant 74 122 IPR001005 -
Ahy19g3180 333 Gene3D - 19 75 - -
Ahy19g3180 333 CDD SANT 79 118 IPR001005 -
Ahy19g3180 333 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 7 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3180 Ahy-Chr19 154939677 154940956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3180 17 160 MYB Transcription Factor Family AT1G68320 80.556 9.24e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy19g3180 Myb_DNA-binding 3.60E-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3180 19 154939677 154940956 Ahy19g3180 19 154939677 154940956 ECH
Ahy19g3180 19 154939677 154940956 Ahy9g2445 9 113333381 113334854 hybridization