Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3171 ATGAGACCAGAAGGAAACCCATTAGACCTTAACAATTTGCCCGATGACTACAATAGAGATCATGGCAAACAACTCCTCCAAGACACCTTCTCTCCCGGTTGCAGGAAAAAGAAAAGCGGCGGCGGTAAGGATGGAAAAGAGGAGTGTGGGAAGGTGTATGAGTGTAGATTTTGTTCCCTCAAGTTCTGCAAGTCCCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACAGAGACGCTGAACCATGCCCGTCAGCTGGTGTTTCGTAACGATCACACCCTTGCTGCTCATCAACCTCCACCTCACTTAGGATGCTGTCAAGACCCAACAGCGGCAGCTCTCAGATTCCCAAGATACTTCTCTGCGTCATCCACGTCATCAACCGCTGCAGCATCTCATCATCAGCCCTATCTATACGCTTCACCATCCAGGCCACCGCCTGTCTCGTTCCCGGGGGCTCATCACCAGTTCGCTCCTCCTCCTCACGATTACTACGTGGGCCATGTCCTCAGCACCGCCCAGCAACACGCCATCAACTACGGCGGTGCGGCGGAGTCATCAGCAGCAGGAGGCAGTTACACGTGCATAGGTGCACCGGTGGTGGGAGGAGGGAAGGAGAGGGATCAGGAAGGGTCGTTGAATTGGGGAAGATCATCATCAACATCGGGATCACAGCCTCATCATCGTTTGGATCCTCCTTCAGCGATCAATCGGTTTCAAGATGGGTTCTAA 744 0.5363 MRPEGNPLDLNNLPDDYNRDHGKQLLQDTFSPGCRKKKSGGGKDGKEECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRNDHTLAAHQPPPHLGCCQDPTAAALRFPRYFSASSTSSTAAASHHQPYLYASPSRPPPVSFPGAHHQFAPPPHDYYVGHVLSTAQQHAINYGGAAESSAAGGSYTCIGAPVVGGGKERDQEGSLNWGRSSSTSGSQPHHRLDPPSAINRFQDGF* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3171 247 Gene3D Classic Zinc Finger 36 103 - -
Ahy19g3171 247 MobiDBLite consensus disorder prediction 208 247 - -
Ahy19g3171 247 MobiDBLite consensus disorder prediction 217 232 - -
Ahy19g3171 247 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Ahy19g3171 247 PANTHER ZINC FINGER PROTEIN JAGGED 1 218 IPR031113 GO:0007275
Ahy19g3171 247 MobiDBLite consensus disorder prediction 1 47 - -
Ahy19g3171 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Ahy19g3171 247 PANTHER ZINC FINGER PROTEIN JAGGED 1 218 IPR045320 GO:0003700
Ahy19g3171 247 SUPERFAMILY beta-beta-alpha zinc fingers 51 81 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3171 Ahy-Chr19 154816203 154818380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3171 4 209 C2H2 Transcription Factor Family AT1G13400 40.930 7.52e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy19g3171 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3171 19 154816203 154818380 Ahy19g3171 19 154816203 154818380 ECH
Ahy19g3171 19 154816203 154818380 Ahy9g2454 9 113476621 113478300 hybridization