Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2140 ATGTCTTCACAAAGTGTAGTTCTTTCATCACTTTTGCTCATGTCATTGGTTTCTTCTTCTGGCTTGTGTTTTGGCTCTTACATTGGCCCTAGGAGGTTGATGCAGACAAAACATGATGAAAATATGGATATCATGTTAAGGGTTCATCATCAATCAACACCATCTTCAATGTCTCAAAAAACGTTTAGTGTTTCACATTATGGAGCAAAATCTGGTGATGGAAGAGTTGATAATGAGGCATTTGAGAAGGCATGGAATTTAGCATGTTCAGAAGGGGGTGCTCTTGTGGTCCCAGAAGAGAAGGTTTATCACCTTAAGCCAATAAAATTTTCAGGCCCATGCCAAGCCACTACCACTTTTATGTTATATGGAACAATCAAAGCATGGCCTAAAATTTCAGCCTATGAAGAAGATAGACAGCACTGGATTATGTTTGATAATATAACGAATTTTGGTGTTGATGGTGGCGGCACTTTCAACGGCAATGGAAAAATATGGTGGGAAAACTCTTGCAAAACTAACGAAAGCCTTCCATGTAAGGATGCACCAACTGCTGTGACTTTCAATGAATGCAACAATTTGAGAGTGGAAAACGTTGCATTCCGAAATGCACAACAAATGCATGTTAGATTTCAGAAATGCAATAACGTTACAGCTTCAAATCTGGTGGTTCAAGCTCCTGGGGATAGCCCTAACACTGATGGACTTCACGTCACTGAAACCAAAAATATATTCATAAGAAACTCTGTCATTCGTACAGGTGATGACTGCATTTCAATAGTGAGTGGGTCCCAAAATGTTCGTGCTACGGATATAGTTTGTGGACCAGGCCATGGAATCAGCATTGGAAGCTTAGGAGCTGGTAATTCAGAAGCACAAGTCTCGAATGTGGTAATCGACGGAGCCATTTTCACAGGAACCACTAATGGTGTTAGAATTAAGACTTGGCAGGGAGGTTCTGGATATGCAAAAGACATCAAATTTGTTAATATAGAAATGCGAAACGTGACCAATCCCATAATCATAGATCAAAACTACTGCGATCAGAAAGAACCATGCCAAGAGCAGGAATCAGCAGTGAAATTGAGCAATGTGGTGTACCAGAACATCATAGGAACAAGTGCAACACAAGTTGCAATCAAATTCAACTGCAGCAAAACCGTCCCCTGCAGATCAATCTATTTGCAAGACGTAATTCTAAAGCCGGAACGCCATGGCAGCGACACGGTTGCGACATGTGAGAACGTTAGATATGCCAACAGAGGACAGCTTTTTCCTCAGTGCTCTACTGCTTGA 1296 0.412 MSSQSVVLSSLLLMSLVSSSGLCFGSYIGPRRLMQTKHDENMDIMLRVHHQSTPSSMSQKTFSVSHYGAKSGDGRVDNEAFEKAWNLACSEGGALVVPEEKVYHLKPIKFSGPCQATTTFMLYGTIKAWPKISAYEEDRQHWIMFDNITNFGVDGGGTFNGNGKIWWENSCKTNESLPCKDAPTAVTFNECNNLRVENVAFRNAQQMHVRFQKCNNVTASNLVVQAPGDSPNTDGLHVTETKNIFIRNSVIRTGDDCISIVSGSQNVRATDIVCGPGHGISIGSLGAGNSEAQVSNVVIDGAIFTGTTNGVRIKTWQGGSGYAKDIKFVNIEMRNVTNPIIIDQNYCDQKEPCQEQESAVKLSNVVYQNIIGTSATQVAIKFNCSKTVPCRSIYLQDVILKPERHGSDTVATCENVRYANRGQLFPQCSTA* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2140 431 SMART pbh1 294 315 IPR006626 -
Ahy18g2140 431 SMART pbh1 264 284 IPR006626 -
Ahy18g2140 431 SMART pbh1 241 262 IPR006626 -
Ahy18g2140 431 SMART pbh1 323 344 IPR006626 -
Ahy18g2140 431 SMART pbh1 214 240 IPR006626 -
Ahy18g2140 431 Gene3D - 47 428 IPR012334 -
Ahy18g2140 431 PANTHER - 5 429 - -
Ahy18g2140 431 PANTHER POLYGALACTURONASE 5 429 - -
Ahy18g2140 431 Pfam Glycosyl hydrolases family 28 95 417 IPR000743 GO:0004650|GO:0005975
Ahy18g2140 431 SUPERFAMILY Pectin lyase-like 51 429 IPR011050 -
Ahy18g2140 431 ProSitePatterns Polygalacturonase active site. 271 284 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2140 Ahy-Chr18 115258603 115264506 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2140 18 115258603 115264506 Ahy8g2060 8 41194701 41199943 hybridization
Ahy13g1133 13 12740889 12744533 Ahy18g2140 18 115258603 115264506 PCT
Ahy20g3159 20 142251501 142253450 Ahy18g2140 18 115258603 115264506 PCT
Ahy10g2597 10 115470422 115477210 Ahy18g2140 18 115258603 115264506 PCT