Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1807 ATGGGGGTCAATGAAGATTTGATGATGAAGGATGATTCATATGCATCATCAGTAATGGAGGAAGAGGATGATGTTCCACTTCCAGGGTTTAGATTCCACCCAACAGATGAAGAACTTGTGAGTTTCTATCTAAAGAGGAAGCTTGACAAGAAACCAATCAGCATCGAACTCATCAAACAGATTGATATCTACAAGTATGATCCTTGGGATCTTCCAACGAGTGGAAGTGGAGGAGAGAAGGAAGGTTACTTCTTTTGCAAGAGAGGGAGGAAGTATAGGAACAGCATAAGGCCTAACAGAGTCACCAGTTCCGGCTTCTGGAAAGCAACCGGGATAGACAAGCCGGTATACTCCCATGGAGGCGAAGGAACCGACTGCATTGGACTCAAGAAGACGCTTGTCTACTACCGCGGCAGCGCCGGTAAAGGTACCAAGACTGATTGGATGATGCACGAGTTTCGCCTCCCTTCTGCCACAACCGAAAACAACACAAGCCTACTTGCCAACAACAAGAATAATAATAATATCAACAATGCCGATGTTGCCCAAGAAGCTGAAATCTGGACATTGTGTAGAATATTCAAGCGAAATGTGTCACAAAGGAAGCACACAGTAGACTTGAGATCACATTTAGTAACAGCTAATAGTAACAAGCACAAAACCACTAGAACCCATGTTGTTCAATCCAATAATAACAATATTAATCAACATCAAGAATCTTACATCAACTTTGGTGCAACAATCATTGGCCATCACCATTACCATCATCATCGTCATCAAAATGAACAGAAGCCAGTGACTAACTACACAGCATGCAATAACAACACTGATCAAATCCAAAGGAACAATAGCAATCATCATCATCATCATCAGTTGAACTATCACCCTTCTTCAGCGGTGGCTACTACTGTGCCACAGCAACAACAACAACAATATCATCATCATCATCAGCTAATGACGGCTCCAGCTTCTAACATGTGGATTAATCCTTCTGCGATGAACGATTTGTTTGCATTTGATGATGACTGGGATGAGCTTGGATCTGTTCTCAAATTCACTGTTGATACCCCTAGCTTGTAA 1080 0.4222 MGVNEDLMMKDDSYASSVMEEEDDVPLPGFRFHPTDEELVSFYLKRKLDKKPISIELIKQIDIYKYDPWDLPTSGSGGEKEGYFFCKRGRKYRNSIRPNRVTSSGFWKATGIDKPVYSHGGEGTDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSATTENNTSLLANNKNNNNINNADVAQEAEIWTLCRIFKRNVSQRKHTVDLRSHLVTANSNKHKTTRTHVVQSNNNNINQHQESYINFGATIIGHHHYHHHRHQNEQKPVTNYTACNNNTDQIQRNNSNHHHHHQLNYHPSSAVATTVPQQQQQQYHHHHQLMTAPASNMWINPSAMNDLFAFDDDWDELGSVLKFTVDTPSL* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1807 359 Pfam No apical meristem (NAM) protein 28 155 IPR003441 GO:0003677|GO:0006355
Ahy18g1807 359 Gene3D NAC domain 35 200 IPR036093 GO:0003677|GO:0006355
Ahy18g1807 359 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 319 - -
Ahy18g1807 359 ProSiteProfiles NAC domain profile. 26 196 IPR003441 GO:0003677|GO:0006355
Ahy18g1807 359 PANTHER CONTAINING PROTEIN 9, PUTATIVE, EXPRESSED-RELATED 16 319 - -
Ahy18g1807 359 SUPERFAMILY NAC domain 26 196 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1807 Ahy-Chr18 68815716 68818324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1807 7 196 NAC Transcription Factor Family AT5G39820 58.549 5.04e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy18g1807 NAM 1.20E-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1807 18 68815716 68818324 Ahy18g1807 18 68815716 68818324 ECH
Ahy18g1807 18 68815716 68818324 Ahy7g1816 7 67924474 67926852 hybridization