Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1760 ATGAGCAACATAAGCTTGGTAGAGGCAAGGCTTCCACCAGGGTTCAGATTTCATCCAAAAGATGAAGAGCTTGTGTGTGATTACTTGATGAAGAAGTTCACGCACAATGAATCCCTTCTCATGATTGATGTCGACCTCAACAAGTGTGAGCCATGGGATATTCCTGAAACAGCATGTGTGGGAGGGAAGGAGTGGTACTTCTACACACAGAGAGACAGAAAGTATGCAACGGGGCTGCGTACAAACAGAGCAACGGCATCAGGATATTGGAAGGCCACTGGCAAGGACAGGCCTATCCTTAGGAAGGGCAGCCTTGTTGGTATGCGAAAGACTCTTGTCTTCTATCAAGGTCGGGCTCCCAAAGGCCGTAAGACTGAGTGGGTCATGCATGAGTTTCGCATTGAACCTCCTCTTCCTCCCCCCAACACTTCTTCTAAGGAAGATTGGGTGTTGTGTAGGGTGTTTTACAAGAACAGAGAAGTTGGTGGCAAACCTAATAGCATGGGAAGCTGCTATGATGACACAGGCTCTTCATCTCTTCCAGCATTAATGGATTCTTTCATCAGCTTTGACCAACAACAACAACCTCAAACCCATCTTCATGCTGATGAGTATGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCACACCCAAACAAGCCCTATTTTCAACCACATAATGGAGCCTAAGTTATTCCCTACCAACAACAACAATAATAATGCAACTTTATATGGTGGAGGAGGAACTACTACAACATCCAATTTGGGTTCTTGCTTAGACCCTTTTTCATGTGATAGGAAAGTATTGAAAGCTGTTTTGAGTCAGCTCACAAATATGGAAAGAAACATACCTAATAATAATAACAACAATACAAATAGTATAAAAGGGTCACCAAGTTTAGGAGAAGGTAGTTCTGAGAGTTACTTATCTGAGGTTGGCATGCCCAACTTGTGGAACAATTATTGA 966 0.4348 MSNISLVEARLPPGFRFHPKDEELVCDYLMKKFTHNESLLMIDVDLNKCEPWDIPETACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILRKGSLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEPPLPPPNTSSKEDWVLCRVFYKNREVGGKPNSMGSCYDDTGSSSLPALMDSFISFDQQQQPQTHLHADEYEQVPCFSIFSHTQTSPIFNHIMEPKLFPTNNNNNNATLYGGGGTTTTSNLGSCLDPFSCDRKVLKAVLSQLTNMERNIPNNNNNNTNSIKGSPSLGEGSSESYLSEVGMPNLWNNY* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1760 321 Gene3D NAC domain 20 162 IPR036093 GO:0003677|GO:0006355
Ahy18g1760 321 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Ahy18g1760 321 ProSiteProfiles NAC domain profile. 11 157 IPR003441 GO:0003677|GO:0006355
Ahy18g1760 321 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN 3 229 - -
Ahy18g1760 321 MobiDBLite consensus disorder prediction 280 308 - -
Ahy18g1760 321 SUPERFAMILY NAC domain 2 158 IPR036093 GO:0003677|GO:0006355
Ahy18g1760 321 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1760 Ahy-Chr18 58337757 58344167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1760 2 319 NAC Transcription Factor Family AT1G56010 58.735 2.13e-125 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy18g1760 NAM 4.80E-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1760 18 58337757 58344167 Ahy18g1760 18 58337757 58344167 ECH
Ahy18g1760 18 58337757 58344167 Ahy7g1881 7 72037667 72043958 hybridization