Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3249 ATGGAGACACGCGCCGCCACAAAGAGAAGAGCCACCGCCCCCACCCAACTCGAGATTCAGCACCTCAAGAAGCAGCGTGTTGTCTTGGCCGAACTCCCCAATTTACCCAACCTCATTCAATCCCCCATTAACAACAGGAAACCCCATTCCACCATTGAAGCAAAATCACTCAAGTTCCACGATCCCAGTCTTATTGACGCGCCTTATGTTGCCGACATACATAGCTATCTTCATTCAATGGAGATGGAGAAGAAGAGAAGGCCAATGGTTGATTACATTCAAAAAGTTCAGAAAGAAGTTACCGCTAACATGAGAGGTGTATTGGTGGATTGGTTGGTAGAGGTTGCAGACGAGTACAAGCTTCTCTCAGAGACTCTTTTTCTCTCTGTTTCTTACATTGATAGATTTCTATCTATAAACCCTGTTTTTCGATCCAAGTTTCAGTTACTCGGTGTTTCCTCCATGCTCATTGCATCGAAGTATGAAGAAATCAACCCTCCGAATGTAGAGGAATTCTGCTACATCACTGAAGATACATACACGAAATCACAGGTTGTACGGATGGAAGCTGAGATACTCAAATCCCTAAAATTTGAAATGGGGAACCCTACTGTTAAGACCTTCCTATCTATGTATTCAGGAATTGCTTCTGTAGATAAAAAAATTAAGCATTCTCAGGTTGAATTTTTGAGCTGCTATCTTGCTGAGCTAAGTCTTTTGGACTATGATTGTGTGAAATTCTTGCCTTCTATGGTAGCTGCTTCGGTTATATTTCTTGCCAGATTTATTATCTGGCCTGTGGTGCATCCTTGGACTTCATCCTTGCGCGAATGCTCCGGTTATACATCGCTTGAACTTAAAGAATGTGTTCTGATCTTACATGACTTGTATTTGTCGAGAAGGGCAGCATCTTTATCAGCTGTTCGGGAGAAATACAAGCAGCACAAGTTCAAATGGGTTGCAAATCTGTCTTCCCCACCAAGTATACCAACTTCTTACTTTAGAGAAGAGTGA 1014 0.4241 METRAATKRRATAPTQLEIQHLKKQRVVLAELPNLPNLIQSPINNRKPHSTIEAKSLKFHDPSLIDAPYVADIHSYLHSMEMEKKRRPMVDYIQKVQKEVTANMRGVLVDWLVEVADEYKLLSETLFLSVSYIDRFLSINPVFRSKFQLLGVSSMLIASKYEEINPPNVEEFCYITEDTYTKSQVVRMEAEILKSLKFEMGNPTVKTFLSMYSGIASVDKKIKHSQVEFLSCYLAELSLLDYDCVKFLPSMVAASVIFLARFIIWPVVHPWTSSLRECSGYTSLELKECVLILHDLYLSRRAASLSAVREKYKQHKFKWVANLSSPPSIPTSYFREE* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3249 337 Gene3D - 72 322 - -
Ahy17g3249 337 PIRSF Cyclin_A_B_D_E 2 334 IPR039361 -
Ahy17g3249 337 SMART cyclin_7 110 194 IPR013763 -
Ahy17g3249 337 SMART cyclin_7 207 295 IPR013763 -
Ahy17g3249 337 SMART Cyclin_C_2 203 326 IPR004367 -
Ahy17g3249 337 Pfam Cyclin, N-terminal domain 72 200 IPR006671 -
Ahy17g3249 337 CDD CYCLIN 104 193 IPR013763 -
Ahy17g3249 337 Gene3D - 86 201 - -
Ahy17g3249 337 PANTHER CYCLINS 51 335 IPR039361 -
Ahy17g3249 337 CDD CYCLIN 203 294 IPR013763 -
Ahy17g3249 337 SUPERFAMILY Cyclin-like 203 328 IPR036915 -
Ahy17g3249 337 SUPERFAMILY Cyclin-like 65 200 IPR036915 -
Ahy17g3249 337 ProSitePatterns Cyclins signature. 105 136 IPR006671 -
Ahy17g3249 337 Pfam Cyclin, C-terminal domain 203 325 IPR004367 -
Ahy17g3249 337 PANTHER CYCLIN-A3-1-RELATED 51 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3249 Ahy-Chr17 134582828 134584868 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g3249 3 336 Core Cell Cycle Gene Families AT5G43080 54.310 1.63e-130 375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3484 16 152169688 152172930 Ahy17g3249 17 134582828 134584868 PCT
Ahy6g2733 6 112902010 112905195 Ahy17g3249 17 134582828 134584868 PCT
Ahy17g3249 17 134582828 134584868 Ahy16g3484 16 152169688 152172930 PCT
Ahy17g3249 17 134582828 134584868 Ahy6g2733 6 112902010 112905195 PCT