Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2839 ATGCTAAGAATGCCAAAGCAAGACACCATTCTTCACTGCACTTTGTTCTTGCTACTCTTGCAGATTCTCACAGCTCCCAAACCAGCAACATGCAAATCCACCATAGAACCCTGCACCAACAACGACTCATGCAACGCGCTCTTAGGCTACACACTCTACACCGACCTTAAAGTCTCCGAGGTAGCTTCACTCTTTCAAATCGACCCTATTTCTCTCCTCACCGCAAACGCCATCGACATATCTTACCCTGACGTGGAGCACCATATTCTCCCTTCCAAGCTCTTCATCAAGGTTCCAATTTCATGCTCCTGCGTCGACGGGATCCGAAAATCGGTTTCAACGCATTACAGGACTCGCCCTTCGGACACGCTTTCTTCCATTGCAGACTCTGTATATGGAGGTTTGGTATCTGCGGACCAGCTTTCGGAGGCTAACTCCATAAGTGACCCTTCGGTTCTTGATGTGGGTCAGAGCCTTCTGGTGCCTCTTCCTTGTACTTGTTTTAATGGCACTGATAATTCACTTCCAGCGATTTACATGTCCTATGTGGTTCAGCCTGTTGATTCTTTGGCTGCTATTGCGGCCAGGTATTTCACTACTTTAACTGATTTGATGGATGTTAATGCCATGGGAAGTACTGCTATTACTGATGGTGATATTCTTGCCATTCCAATTCCGGCTTGTGCTTCAAATTTCCCAAGATCTTCTTCTGATTTTGGCTTGCTTGTTCCCAATGGAAGTTATGCCATTACAGCAGGGCATTGTGTGCAGTGTAGCTGTGGACCGCGGGATCTTAATTTGTATTGTATGCCGGCTTCGCTGGCTGTTTCTTGCTCCAGCATGCAATGTAAAAACAGCAATCTTATGCTTGGGAATGTTACGATCCAACAAGGTAGTGGCGGCTGCAATGTTACTTCTTGTAACTATGATGGCATTGTTAATGGAACCATAATGACAATGTTGACACCATCCCTTCAACCTCGATGTCCAGGGTCTAGGGAATTCCCCCCTCTCATTGCCCCACCTACATCTATAAGGAGAGATTCAGAACTAGCACCAGCACCAGCACCTCAATCAGATGGAATCGGTCTAGGAACGCCCAAATCCTCAGTGGTTCCTTCAACAACAGGTCTTCCAGGATTCCCGCCGGCAAATGGTCCTATTAGCGCGCTTTCTTCTGGTGCTTCTGCCGCTTGCTCCTTGGTTATTCCATCATCCGCCATGACATCTGCACTTGTGTTATTACTTGTCAAGTTGATGATCCCTGTGGCATTGTAA 1278 0.4695 MLRMPKQDTILHCTLFLLLLQILTAPKPATCKSTIEPCTNNDSCNALLGYTLYTDLKVSEVASLFQIDPISLLTANAIDISYPDVEHHILPSKLFIKVPISCSCVDGIRKSVSTHYRTRPSDTLSSIADSVYGGLVSADQLSEANSISDPSVLDVGQSLLVPLPCTCFNGTDNSLPAIYMSYVVQPVDSLAAIAARYFTTLTDLMDVNAMGSTAITDGDILAIPIPACASNFPRSSSDFGLLVPNGSYAITAGHCVQCSCGPRDLNLYCMPASLAVSCSSMQCKNSNLMLGNVTIQQGSGGCNVTSCNYDGIVNGTIMTMLTPSLQPRCPGSREFPPLIAPPTSIRRDSELAPAPAPQSDGIGLGTPKSSVVPSTTGLPGFPPANGPISALSSGASAACSLVIPSSAMTSALVLLLVKLMIPVAL* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2839 425 ProSiteProfiles LysM domain profile. 114 161 IPR018392 -
Ahy17g2839 425 SUPERFAMILY LysM domain 180 225 IPR036779 -
Ahy17g2839 425 Gene3D LysM domain 110 170 IPR036779 -
Ahy17g2839 425 MobiDBLite consensus disorder prediction 343 369 - -
Ahy17g2839 425 CDD LysM 114 161 IPR018392 -
Ahy17g2839 425 CDD LysM 181 223 IPR018392 -
Ahy17g2839 425 SMART LysM_2 181 224 IPR018392 -
Ahy17g2839 425 SMART LysM_2 115 162 IPR018392 -
Ahy17g2839 425 Pfam LysM domain 182 224 IPR018392 -
Ahy17g2839 425 Pfam LysM domain 116 162 IPR018392 -
Ahy17g2839 425 ProSiteProfiles LysM domain profile. 180 223 IPR018392 -
Ahy17g2839 425 Gene3D LysM domain 171 235 IPR036779 -
Ahy17g2839 425 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 23 415 - -
Ahy17g2839 425 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 23 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2839 Ahy-Chr17 127339261 127342607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2839 15 400 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 68.542 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2839 - - gmx:100808966 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2839 17 127339261 127342607 Ahy17g2839 17 127339261 127342607 ECH
Ahy17g2839 17 127339261 127342607 Ahy8g0558 8 10973250 10976611 hybridization