Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2557 ATGGACACAGCTCAGTGGGCACAGGGAATAGGAGTGGTAAAAGCAATGGAAGGTTCGTCAACAAAAGCGTGTTCTTCATCATCTTCGGTGTTAGAGAGAAGAACAAGGCCAGTGAAGGATCAAGCACTTAACTGTCCACGGTGCAACTCAACCAACACAAAATTCTGTTACTACAACAACTACAGCCTCTCTCAGCCACGCTACTTCTGCAAAACTTGCAGAAGGTATTGGACTGAAGGTGGTTCCTTGAGAAACGTTCCCGTTGGCGGCGGTTCCAGAAAGAACAAGAGATCCTCCTCCACTCCTCCATCATCATCTTTAACTAATAAGAACCCAAAGATCATCCATCAAGGACAAGATCTTAACTTAGCATATCCACCACCACCACCCCCTCCTCATCCTCATCATGACGATTCTGCTACGGAGTTTCTGAGAAGTGGGATCAATACTACTACTAATACTTCAAGGGGATTGAATTCTTTTATGCCGATGTCGCTTTCGGATTCTACAATGTATAGTACGGCAGGGTTTGGTGCTCCAATGCAAGAGTTCATCAAATCTGGTGGACTTAACTTTAGTCTTGAAGAAGGGTTTGAGAGTGGTGGTGGTGCAAGGGTTTTGTTTCCTTCTTCGGAGGAAAAGAATACCAATAGAACTGATTCAACTACTGCTGGCTTTTGGAATGGCATGCTAGGTGGAGCATCATGGTAG 711 0.4501 MDTAQWAQGIGVVKAMEGSSTKACSSSSSVLERRTRPVKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSSTPPSSSLTNKNPKIIHQGQDLNLAYPPPPPPPHPHHDDSATEFLRSGINTTTNTSRGLNSFMPMSLSDSTMYSTAGFGAPMQEFIKSGGLNFSLEEGFESGGGARVLFPSSEEKNTNRTDSTTAGFWNGMLGGASW* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2557 236 Pfam Dof domain, zinc finger 40 97 IPR003851 GO:0003677|GO:0006355
Ahy17g2557 236 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Ahy17g2557 236 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Ahy17g2557 236 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 109 - -
Ahy17g2557 236 MobiDBLite consensus disorder prediction 84 141 - -
Ahy17g2557 236 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 109 IPR045174 GO:0003700|GO:0006355
Ahy17g2557 236 MobiDBLite consensus disorder prediction 92 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2557 Ahy-Chr17 121019387 121020802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2557 33 236 C2C2-Dof Transcription Factor Family AT3G61850 41.948 5.31e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy17g2557 zf-Dof 8.20E-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2557 - - adu:107460523 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0360 12 5220586 5222990 Ahy17g2557 17 121019387 121020802 ECH
Ahy17g2557 17 121019387 121020802 Ahy17g2557 17 121019387 121020802 ECH
Ahy17g2557 17 121019387 121020802 Ahy8g0346 8 7152343 7153660 hybridization