Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2468 ATGAAAGCTACTACTCCTCCTCCTTACACAGCAATGCCAATTCAAATGCAAAGCTTTTCTTCATCCGCGTTATTGGCGGAGCCAGACCTCTCCTTAAACATTAGCCCTCCTTTCCTTTCTGCCAAAGGAACATTCAAAGATATGTGCTCCTCAATCTCTGATTCAGGTAGTAGTGGAAGCGATGCAAGCCATGATAATAATAATAATAATAATAATTGCTTCTTTCACCACACCCACACTGTTCCACAACCGACATTGACATTAGGGTCTGGACCTGCATCAAACTTGAATCATCATCATCATTATCATCATCTCCATCAGTATCCAATGCAAGGGCTCTCAAGAAACTACTTCAATCATCATCCTCACCAACCTCAAATCCATTGCCGCTCCGATTTCAAACGAAATGGTGGCGGGAGAAGAAGCATGAGAGCTCCCAGAATGAGATGGACTACCACACTCCATGCTCATTTTGTTCATGCTGTTCAGCTTCTTGGCGGTCATGAAAGGGCAACTCCGAAGTCAGTGTTAGAGTTAATGAATGTTAAGGATCTAACTCTAGCTCACGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAAGTCCCAGGTAATGGTCACAAGGTAGATATGGGGTTCGAGCAGCAAAGGCAAGAGGTCGTTGTGGATCATCTGCATGCTCAGAGAGGCCTTCTCCAACACCCACTGGTGCAACTGCAACAATCCCAAAGGTCATCATGTCAATCACCACTACTAGAGACAAATACAAATATTACTCGACAAAAACCCGATATCAGCTTCGTGTATTCTCGTCTCCAAGATGGCAATGAAATCATGAATAATCACGGAGGGTTGTCGAATTACTTGAAGATGAAGGAGAGCTCGGACTGTAACAATTTATCGTCAGATTCAGAAGGCGTTATTGATCTGGAATTCACTCTTGGAAGGCCAACACACCATCAGGATGAATCATCAAGAGAGTTAACTCTTCTCAAGTGTTAA 1014 0.4339 MKATTPPPYTAMPIQMQSFSSSALLAEPDLSLNISPPFLSAKGTFKDMCSSISDSGSSGSDASHDNNNNNNNCFFHHTHTVPQPTLTLGSGPASNLNHHHHYHHLHQYPMQGLSRNYFNHHPHQPQIHCRSDFKRNGGGRRSMRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKVPGNGHKVDMGFEQQRQEVVVDHLHAQRGLLQHPLVQLQQSQRSSCQSPLLETNTNITRQKPDISFVYSRLQDGNEIMNNHGGLSNYLKMKESSDCNNLSSDSEGVIDLEFTLGRPTHHQDESSRELTLLKC* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2468 337 MobiDBLite consensus disorder prediction 125 139 - -
Ahy17g2468 337 Gene3D - 145 202 - -
Ahy17g2468 337 Pfam Myb-like DNA-binding domain 147 198 IPR001005 -
Ahy17g2468 337 MobiDBLite consensus disorder prediction 124 143 - -
Ahy17g2468 337 SUPERFAMILY Homeodomain-like 143 200 IPR009057 -
Ahy17g2468 337 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 23 337 IPR044847 GO:0000976|GO:0006355|GO:0010158
Ahy17g2468 337 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 23 337 - -
Ahy17g2468 337 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 146 199 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2468 Ahy-Chr17 118095914 118099920 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ahy17g2468 Myb_DNA-binding 1.50E-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2468 17 118095914 118099920 Ahy17g2468 17 118095914 118099920 ECH
Ahy17g2468 17 118095914 118099920 Ahy8g0269 8 5591211 5595134 hybridization
Ahy16g3594 16 153547246 153553785 Ahy17g2468 17 118095914 118099920 PCT
Ahy6g2840 6 114243241 114249780 Ahy17g2468 17 118095914 118099920 PCT
Ahy17g2468 17 118095914 118099920 Ahy16g3594 16 153547246 153553785 PCT
Ahy17g2468 17 118095914 118099920 Ahy6g2840 6 114243241 114249780 PCT