Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2375 ATGGATTCAACTTGTGCAGCACTGAGTGCCACCAATCTAGTTCAACTTAGTAACAAATTTGGAAGAAACAGAGCAACTCTGTTCTGGGGTGAATCTAAAATAGCCCCTCAAATAAGAACAACAACAACGTTCTTGAGTGTTCAATCAACCAAGCCTGCAACTGCACACGCTGTTCTCACATCAGATGTGAATCAAGAGTCCACGGCATTCCAGGAGGAACATAATTTTGAAACCCCTGAAGCAGACCCAAAAGGTGTAGCTTCTATCATTTTGGGTGGAGGTGCTGGAACTCGCCTCTTTCCTCTTACTGGCAGAAGAGCCAAACCTGCGGTTCCAATAGGAGGGTGTTATAGACTCATTGATATCCCTATGAGCAATTGCATCAATAGTGGCATCAAGAAAATATTCATTTTAACTCAGTTCAACTCTTTCTCCCTCAATCGTCACTTGTCTCGCTTATACAGCTTTGGAAATGGCCTTAGTTTTGGGGATGGTTTTGTGGAGGTCTTGGCTGCAACTCAAACACCTGGAGAAACAGGGAAGAAATGGTTCCAAGGGACAGCTGATGCTGTGAGGCAATTTATATGGGTCTTTGAGGATGCCAAGAACAAGAATATTGAGAATATATTGATACTTTCTGGTGATCATCTTTACCGAATGGACTATATGAACTTTGTACAGAAACATATCGACACAAATGCTGATATCACAGTTTCGTGTGTGCCCATGGATGATAGCCGCGCATCAGATTATGGGCTGATGAAAATTGATAAAACAGGACGGATTGTACAGTTTGCAGAAAAGCCAAAGGGATCTGATCTGAAGGAAATGAAAGTTGACACCACTGTCCTCGGGTTATCTGCAGAAGAAGCAAAGAAACATCCTTACATTGCATCAATGGGTGTCTATGTCTTTAGAACTGAAACCCTGCTGAAACTACTAAGATGGAGCTGTTCTTCGTGCAATGACTTTGGATCTGAAATAATCCCATCTGCTGTGAAAGATCACAATGTCCAGGCATATTTGTTTAATGATTACTGGGAAGATATTGGAACTATAAAGTCTTTCTTTGACGCAAATTTGGCCCTTACAGAGCAGCCTCCAAAATTTGAATTCTATGATCCAAAGACTCCTTTCTTCACTTCCCCAAGGTTCCTACCACCCACTAAAGTAGAAAAATGCAAGATCGTGGATGCAATTATTTCTCATGGGTGCTTCTTGAGGGAGTGCAGCGTTCAACATTCTATTGTTGGGGTGCGCTCACGTCTAGAGTCCGGTGTGGAGCTTAAGGATACCATGATGATGGGTGCTGATTATTATCAAACTGAGTCTGAAATTGCATCCTTTCTAGCAGAAGGAAAGGTTCCAATTGGTGTGGGAGAGAATACCAAAATCAGGAATTGTATCATTGACAAGAATGCCAAGATAGGAAGAAATGTGATTATTGCAAATGGTGATGGTGTGGAAGAAGCAGACAGGCCTAATGAAGGATTCTACATTAGGTCTGGCATCACAGTTGTTCTAAAAAATGCAACAATCAAAGATGGAACAGTAATATGA 1560 0.4167 MDSTCAALSATNLVQLSNKFGRNRATLFWGESKIAPQIRTTTTFLSVQSTKPATAHAVLTSDVNQESTAFQEEHNFETPEADPKGVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDIPMSNCINSGIKKIFILTQFNSFSLNRHLSRLYSFGNGLSFGDGFVEVLAATQTPGETGKKWFQGTADAVRQFIWVFEDAKNKNIENILILSGDHLYRMDYMNFVQKHIDTNADITVSCVPMDDSRASDYGLMKIDKTGRIVQFAEKPKGSDLKEMKVDTTVLGLSAEEAKKHPYIASMGVYVFRTETLLKLLRWSCSSCNDFGSEIIPSAVKDHNVQAYLFNDYWEDIGTIKSFFDANLALTEQPPKFEFYDPKTPFFTSPRFLPPTKVEKCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVELKDTMMMGADYYQTESEIASFLAEGKVPIGVGENTKIRNCIIDKNAKIGRNVIIANGDGVEEADRPNEGFYIRSGITVVLKNATIKDGTVI* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2375 519 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 2 519 - -
Ahy17g2375 519 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 183 191 IPR005836 GO:0005978|GO:0008878
Ahy17g2375 519 SUPERFAMILY Nucleotide-diphospho-sugar transferases 88 480 IPR029044 -
Ahy17g2375 519 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 2 519 IPR011831 GO:0005978|GO:0008878
Ahy17g2375 519 Pfam Nucleotidyl transferase 88 365 IPR005835 GO:0009058|GO:0016779
Ahy17g2375 519 CDD ADP_Glucose_PP 89 350 - -
Ahy17g2375 519 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 92 111 IPR005836 GO:0005978|GO:0008878
Ahy17g2375 519 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 68 384 IPR029044 -
Ahy17g2375 519 Gene3D Hexapeptide repeat proteins 385 519 - -
Ahy17g2375 519 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 87 483 IPR011831 GO:0005978|GO:0008878
Ahy17g2375 519 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 298 308 IPR005836 GO:0005978|GO:0008878
Ahy17g2375 519 CDD LbH_G1P_AT_C 387 513 - -
Ahy17g2375 519 SUPERFAMILY Trimeric LpxA-like enzymes 381 519 IPR011004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2375 Ahy-Chr17 114330965 114336140 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2375 17 114330965 114336140 Ahy17g2375 17 114330965 114336140 ECH
Ahy17g2375 17 114330965 114336140 Ahy8g0051 8 807804 812731 hybridization
Ahy16g3677 16 154694057 154699328 Ahy17g2375 17 114330965 114336140 PCT
Ahy6g2924 6 115390052 115395323 Ahy17g2375 17 114330965 114336140 PCT
Ahy17g2375 17 114330965 114336140 Ahy16g3677 16 154694057 154699328 PCT
Ahy17g2375 17 114330965 114336140 Ahy6g2924 6 115390052 115395323 PCT